Pinned Repositories
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
cactus
Official home of genome aligner based upon notion of Cactus graphs
est-sfs-helpers
forester
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
gcv
Federating genomes with love (and synteny derived from functional annotations)
genomeannotator
Pipeline for the identification of (coding) gene structures in draft genomes.
graphql-server
A GraphQL server that supports dynamic content in the LIS Jekyll site
haploallele_utils
IGV
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
singlecell_paralogue_expression_scripts
Various scripts in support of analyses for "Expression partitioning of duplicate genes at single cell resolution"
adf-ncgr's Repositories
adf-ncgr/IGV
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
adf-ncgr/singlecell_paralogue_expression_scripts
Various scripts in support of analyses for "Expression partitioning of duplicate genes at single cell resolution"
adf-ncgr/ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
adf-ncgr/cactus
Official home of genome aligner based upon notion of Cactus graphs
adf-ncgr/est-sfs-helpers
adf-ncgr/forester
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
adf-ncgr/gcv
Federating genomes with love (and synteny derived from functional annotations)
adf-ncgr/graphql-server
A GraphQL server that supports dynamic content in the LIS Jekyll site
adf-ncgr/haploallele_utils
adf-ncgr/lis_hacks
assorted quick-and-dirty scripts that have lived in too many places on too many systems
adf-ncgr/MCScanx
MCScanX: Multiple Collinearity Scan toolkit X version. Various downstream displaying and analysis tools for synteny detected using modified MCScan approach.
adf-ncgr/MPR_install
adf-ncgr/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
adf-ncgr/sNucRNA_ATAC_scripts
scripts in support of "Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level"
adf-ncgr/tripal
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
adf-ncgr/vcflib
C++ library and cmdline tools for parsing and manipulating VCF files
adf-ncgr/virtualgenome
a microservice for serving a virtually combined genome out of individual genomes