Pinned Repositories
agiovann.github.io
binder
reproducible executable environments
ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
CalBlitz
Blazing fast calcium imaging analysis toolbox
constrained_foopsi_python
Python implementation of the constrained deconvolution algorithm
Motion_Correction
Code for motion correcting calcium imaging movies
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
online_psp_matlab
Benchmark of online PCA algorithms
NNQP
Efficient numba based implementation of a nonnegative quadratic programming solver
agiovann's Repositories
agiovann/CalBlitz
Blazing fast calcium imaging analysis toolbox
agiovann/ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
agiovann/Motion_Correction
Code for motion correcting calcium imaging movies
agiovann/agiovann.github.io
agiovann/binder
reproducible executable environments
agiovann/constrained_foopsi_python
Python implementation of the constrained deconvolution algorithm
agiovann/fastplotlib
Next-gen fast plotting library running on WGPU using the pygfx rendering engine
agiovann/keras
Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.
agiovann/Matrix-Theory-Solutions
Solutions to Joel Franklin's Matrix Theory
agiovann/OOPTimeSeries
Analysis of Scanimage Fluorescence Movies
agiovann/pyfluo
A python library for Ca imaging data analysis.
agiovann/PythonUtils
General Utilities missing in the base package
agiovann/rcnn
R-CNN: Regions with Convolutional Neural Network Features
agiovann/sima
Python package for analysis of dynamic fluorescence microscopy data
agiovann/SPGL1_python_port
Port of SPGL1 to python
agiovann/test_bme
Test Repository for B<E class