akdel

advent_of_code_2019

aoc2018

locality-sensitive-hashing

fast and simple locality-sensitive hashing implemented in (numba + numpy)

OptiMap

OptiScan

OptiScan is an open source tool for extraction of nick and backbone signals from provided Bionano Genomics optical map TIFF images.

mars2020api

Unofficial Python API for NASA's Mars rover images and metadata (with a touch of image processing)

alphafold-structural-space

Structural space exploration of AlphaFold DB

caretta

A software-suite to perform multiple protein structure alignment and structure feature extraction.

geometricus

A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.

geometricus_deep_learning

Exploring geometric deep learning algorithms with rotation invariant moments for protein structures

akdel/locality-sensitive-hashing

fast and simple locality-sensitive hashing implemented in (numba + numpy)

akdel/OptiMap

akdel/OptiScan

OptiScan is an open source tool for extraction of nick and backbone signals from provided Bionano Genomics optical map TIFF images.

akdel/advent_of_code_2019

akdel/aoc2018

akdel/genie

De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds

akdel/jrnl

A simple command line journal application that stores your journal in a plain text file.

akdel/lab-starter

akdel/mermaid-filter

Pandoc filter for creating diagrams in mermaid syntax blocks in markdown docs

akdel/MomentLearn

akdel/OptiDiff

akdel/picea

lightweight python library for working with trees and sequence collections

akdel/torch2vec

A PyTorch implementation of Doc2Vec (distributed memory) with similarity measure.