alexandrutomescu

Associate Professor

University of HelsinkiHelsinki

Pinned Repositories

complete-contigs
An assembler of unitigs, Y-to-V contigs and omnitigs
Language:C++5 1 03
create-flow-graphs
Language:Python0 1 00
MixedPerfectPhylogeny
Language:C++2 1 01
SNV-PPILP
Refined SNV calling for tumor data using perfect phylogenies and ILP
Language:Python1 1 00
width-2-graphs
Language:Python00
ggcat
Compacted and colored de Bruijn graph construction and querying
Language:Rust79 6 3910
GraphChainer
An accurate aligner of long reads to a variation graph, based on co-linear chaining
Language:C++32 4 64
metaflow
MetaFlow is a program for community profiling of a metagenomic sample
Language:C++7 2 31
MFD-ILP
Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.
Language:Jupyter Notebook12 5 10
mfd-safety
Language:Python4 3 00

alexandrutomescu's Repositories

alexandrutomescu/complete-contigs
An assembler of unitigs, Y-to-V contigs and omnitigs
Language:C++5 1 03
alexandrutomescu/MixedPerfectPhylogeny
Language:C++2 1 01
alexandrutomescu/SNV-PPILP
Refined SNV calling for tumor data using perfect phylogenies and ILP
Language:Python1 1 00
alexandrutomescu/create-flow-graphs
Language:Python0 1 00
alexandrutomescu/width-2-graphs
Language:Python00