Pinned Repositories
.dotfiles
dot files for bash, vim, screen, etc
alpine-pandoc
chrome-history
scripts to write out chrome history on osx
cmo
Python Package for the CMO
data.table.examples
enrichR
A hacky little interface to call the Enrichr functional enrichment tool from R.
FACETS.app
Wrapper around counting and facets R code
gistic_plot
JoinFACETS2maf_example
Example FACETS results and maf to test annotation
scripts
alexpenson's Repositories
alexpenson/cmo
Python Package for the CMO
alexpenson/alpine-pandoc
alexpenson/cloud-build-test
alexpenson/docker-stan
Dockerfiles with rstan and CmdStan
alexpenson/ELF
ELF: a platform for game research with AlphaGoZero/AlphaZero reimplementation
alexpenson/go_mac
alexpenson/GobanPDF
alexpenson/goreviewpartner
A tool to help analyse and review your game of go (weiqi, baduk) using strong bots.
alexpenson/grp
alexpenson/hey-robin
alexpenson/image-mining
Experiments mining image collections using OpenCV
alexpenson/jekyll-now
Build a Jekyll blog in minutes, without touching the command line.
alexpenson/leelazerodocker
alexpenson/lizzie-gcloud-setup
Setup for running Leela Zero in the google cloud and using it from a local Lizzie
alexpenson/lz
Go engine with no human-provided knowledge, modeled after the AlphaGo Zero paper.
alexpenson/md_template
Create docx of an academic paper from markdown
alexpenson/msisensor
microsatellite instability detection using paired tumor-normal
alexpenson/msk_impact_2017
alexpenson/neural-style-docker
A dockerized version of neural style transfer algorithms
alexpenson/pandoc-docx-pagebreak
alexpenson/pandocker-alpine
Yet another alpine based Dockerfile for pandoc and docx
alexpenson/progit
Pro Git Book Content, 1st Edition - This content is deprecated. See 2nd edition at [progit2](https://github.com/progit/progit2)
alexpenson/progit2
Pro Git 2nd Edition
alexpenson/rna-seq-kallisto-sleuth
alexpenson/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
alexpenson/rstan-docker
Dockerfile for a minimal RStan image
alexpenson/RXGBfi
alexpenson/sgf_reviews
alexpenson/snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
alexpenson/vx-tut