Pinned Repositories
.dotfiles
dot files for bash, vim, screen, etc
alpine-pandoc
chrome-history
scripts to write out chrome history on osx
cmo
Python Package for the CMO
data.table.examples
enrichR
A hacky little interface to call the Enrichr functional enrichment tool from R.
FACETS.app
Wrapper around counting and facets R code
gistic_plot
JoinFACETS2maf_example
Example FACETS results and maf to test annotation
scripts
alexpenson's Repositories
alexpenson/scripts
alexpenson/chrome-history
scripts to write out chrome history on osx
alexpenson/data.table.examples
alexpenson/enrichR
A hacky little interface to call the Enrichr functional enrichment tool from R.
alexpenson/FACETS.app
Wrapper around counting and facets R code
alexpenson/gistic_plot
alexpenson/JoinFACETS2maf_example
Example FACETS results and maf to test annotation
alexpenson/.dotfiles
dot files for bash, vim, screen, etc
alexpenson/bedtools2
A powerful toolset for genome arithmetic.
alexpenson/BIC-RNAseq
Internal portable version of BIC RNAseq pipeline; uses Bpipe
alexpenson/dndscv
dN/dS methods to quantify selection in cancer and somatic evolution
alexpenson/flask-ghpages-example
An example of how you can deploy a static Flask app on Github pages
alexpenson/GetBaseCounts
alexpenson/homebrew
The missing package manager for OS X.
alexpenson/homebrew-science
Scientific formulae for the Homebrew package manager
alexpenson/JoinFacets2MAF
Code to join the output of FACETS to the corresponding MAF file
alexpenson/JOINing-Data-with-R-data.table
How to perform the different types of SQL-JOINs in R using data.table
alexpenson/Jukely-Checker
This is a NodeJS app to check and book your interested events.
alexpenson/metriclearning
Automatically exported from code.google.com/p/metriclearning
alexpenson/mutation-signatures
Create mutation signatures from MAF's, and decompose them into Stratton signatures
alexpenson/negative_selection
alexpenson/oh-my-zsh
A community-driven framework for managing your zsh configuration. Includes 120+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, macports, etc), over 120 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
alexpenson/pancreatic-patients
alexpenson/panflute
An Pythonic alternative to John MacFarlane's pandocfilters, with extra helper functions
alexpenson/prezto
The configuration framework for Zsh
alexpenson/sgf-analyzer
alexpenson/shogun
The Shogun Machine Learning Toolbox (Source Code)
alexpenson/STAR.DEXSeq
alexpenson/THEMIS
Tumor Heterogeneity Extensible Modeling via an Integrative System
alexpenson/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms