alimanfoo
Malaria Vector Surveillance Lead at the Wellcome Sanger Institute, Genomic Surveillance Unit.
Wellcome Sanger InstituteBerkshire, UK
Pinned Repositories
csvvalidator
A small CSV validator library for Python.
numpydoc_decorator
Build numpy-style docstrings programmatically and apply them using a decorator.
pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
vcfnp
Load numpy arrays and HDF5 files from VCF (variant call format)
zarrita
scikit-allel
A Python package for exploring and analysing genetic variation data
malariagen-data-python
Analyse MalariaGEN data from Python
thereisnocourse
zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
alimanfoo's Repositories
alimanfoo/pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
alimanfoo/csvvalidator
A small CSV validator library for Python.
alimanfoo/zarrita
alimanfoo/numpydoc_decorator
Build numpy-style docstrings programmatically and apply them using a decorator.
alimanfoo/alimanfoo.github.io
Alistair Miles' blog
alimanfoo/malariagen-data-python
A Python package providing convenience functions for accessing MalariaGEN public data.
alimanfoo/alimanfoo
My personal repo.
alimanfoo/ag-voc
alimanfoo/AgamPrimer
Primer Design in Anopheles gambiae considering genetic variation
alimanfoo/anjl
A neighbour-joining library for Python.
alimanfoo/anopheles-genomic-surveillance.github.io
Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN
alimanfoo/fantastic-spork
alimanfoo/hackmd-test
alimanfoo/I-Spy-Game-Ibra
Take turns playing "I Spy" game with the computer
alimanfoo/landing-page-creative
Draft landing page for the malaria vector genome observatory.
alimanfoo/nebari-docker-images
📦 Ready to use Docker images maintained by the Nebari team
alimanfoo/panel-tryout
alimanfoo/protopunica
The wild ancestor of pomegranate.
alimanfoo/pymc
Bayesian Modeling and Probabilistic Programming in Python
alimanfoo/pymc-examples
Examples of PyMC models, including a library of Jupyter notebooks.
alimanfoo/Python_Programming_Learning
This repository is for general learning purposes. Aim is to learn conventional way to write a python code.
alimanfoo/qhub
QHub deployment tool
alimanfoo/redesigned-parakeet
Test repo for selection atlas tech.
alimanfoo/streamlit-ag3
alimanfoo/test-markdown
alimanfoo/there-is-no-course
This is not a course in how to become an awesome Python programmer.
alimanfoo/vcf-zarr-publication
Manuscript and associated scripts for vcf-zarr publication
alimanfoo/voila-railway-demo
alimanfoo/zarr-specs
alimanfoo/zeps
Zarr Enhancement Proposals