Pinned Repositories
ag1000g-phase2-vgsc-report
Analysis of the Vgsc gene as part of Ag1000G phase 2.
agam-selection-atlas
Ag1000G selection atlas
ano-spp
A targeted amplicon sequencing panel to simultaneously identify mosquito species and Plasmodium presence across the entire Anopheles genus
GeneticReportCard
Genetic Report Card code
grcMalaria
Tools for processing and analyzing SpotMalaria Genetic Report Cards
journal-club
malariagen-data-python
Analyse MalariaGEN data from Python
pf-haploatlas
pipelines
Pipelines for processing malaria parasite and mosquito genome sequence data.
vector-data
Documentation, discussion forum and issue tracker for malaria vector genomic data released by MalariaGEN.
MalariaGEN's Repositories
malariagen/pipelines
Pipelines for processing malaria parasite and mosquito genome sequence data.
malariagen/malariagen-data-python
Analyse MalariaGEN data from Python
malariagen/vector-data
Documentation, discussion forum and issue tracker for malaria vector genomic data released by MalariaGEN.
malariagen/GeneticReportCard
Genetic Report Card code
malariagen/ano-spp
A targeted amplicon sequencing panel to simultaneously identify mosquito species and Plasmodium presence across the entire Anopheles genus
malariagen/agam-selection-atlas
Ag1000G selection atlas
malariagen/grcMalaria
Tools for processing and analyzing SpotMalaria Genetic Report Cards
malariagen/journal-club
malariagen/ag1000g-phase1-vgsc-report
malariagen/ag1000g-phase2-vgsc-report
Analysis of the Vgsc gene as part of Ag1000G phase 2.
malariagen/ag1000g-phase3-data-paper
malariagen/mgenv
Repository with installation scripts and environment definitions for conda and texlive, for standardising environments across the MalariaGEN resource centre team.
malariagen/pf-haploatlas
malariagen/sims-backbone
malariagen/Pf6plus
A repository hosting Pf6+, an accessible resource with over 13,000 WGS and targeted-genotyped P. falciparum samples with information on drug-resistant phenotypes.
malariagen/anopheles-genomic-surveillance.github.io
Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN
malariagen/anospp-analysis
Python package for ANOSPP data analysis
malariagen/datalab-guide
User guide and documentation for the MalariaGEN DataLab service
malariagen/deprecated-ag1000g-phase3-data-paper
Repository for building a manuscript describing the Ag1000G phase 3 data resource.
malariagen/grcMalariaGeodata
Geographical data required by the grcMalaria R package in order to generate maps from GRC data
malariagen/intake
Intake data catalogs for MalariaGEN.
malariagen/mali-analysis-paper
malariagen/malvecbib
A bibtex bibliography for all things related to malaria vector biology and genomics.
malariagen/manubot-test
malariagen/parasite-data
Documentation, discussion forum and issue tracker for malaria parasite genomic data released by MalariaGEN.
malariagen/phenotyper
malariagen/pv-muhap
Supporting notebooks and data for the Pv microhaplotypes paper
malariagen/streamlit-plotly-events2
malariagen/vobs-sea-pilot-paper
A pilot study of whole-genome sequencing of diverse Anopheles species from Cambodia
malariagen/vobs-updates
Minisite with technical updates from the Malaria Vector Genome Observatory.