Pinned Repositories
dynamo2m
a bidirectional interface between Dynamo and the Warp-RELION-M pipeline
eulerangles
simplify the handling of large sets of Euler angles in Python
mdocspoofer
spoof mdoc files from tomo5 frames directories
napari-mrcfile-reader
Read MRC format image files into napari using the mrcfile package from CCP-EM
napari-subboxer
napari-workshops
A JupyterBook site for napari workshop materials
napari
napari: a fast, interactive, multi-dimensional image viewer for python
napari-animation
A napari plugin for making animations
fidder
Detect and erase gold fiducials in cryo-EM images
starfile
STAR file I/O in Python
alisterburt's Repositories
alisterburt/eulerangles
simplify the handling of large sets of Euler angles in Python
alisterburt/napari-mrcfile-reader
Read MRC format image files into napari using the mrcfile package from CCP-EM
alisterburt/dynamo2m
a bidirectional interface between Dynamo and the Warp-RELION-M pipeline
alisterburt/mdocspoofer
spoof mdoc files from tomo5 frames directories
alisterburt/napari-workshops
A JupyterBook site for napari workshop materials
alisterburt/tomo_preprocessing
alisterburt/napari-cryo-et-demo
Using napari to visualise cryo-electron tomography data programmatically
alisterburt/napari-subboxer
alisterburt/warp2isonet
prepare ISONET training data from a warp project directory
alisterburt/DynaMight
Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset
alisterburt/napari-tomoslice
tomogram visualisation and annotation in napari
alisterburt/tilt-image-excluder
QWidget for napari that enables excluding tilt-images from a tilt-series
alisterburt/ttctf
Spatially and temporally resolved CTF estimation for cryo-EM images.
alisterburt/ttmotion
Inter-frame motion estimation and correction for cryo-EM images.
alisterburt/alisterburt
alisterburt/alisterburt.github.io
personal website
alisterburt/bluesquare
alisterburt/ETSegTools
Operations on Quantized or Binary CryoET Segmentations
alisterburt/I2K2022-napari-workshop
alisterburt/LibreTransmitter
alisterburt/lnl-scripts
New home for Loop and Learn scripts
alisterburt/microvis
alisterburt/mmdf
macromolecular structures as pandas DataFrames
alisterburt/molstar-embed-simple
testing building an embeddable viewer with molstar
alisterburt/molstar-linked-orthoslice
A linked orthoslice viewer in Mol*
alisterburt/molstar-multi-volume-grid
A web-based tiled volume viewer built on mol*
alisterburt/napari
napari: a fast, interactive, multi-dimensional image viewer for python
alisterburt/pydev-guide.github.io
Guide to python package development for scientists
alisterburt/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
alisterburt/tiler
N-dimensional NumPy array tiling and merging with overlapping, padding and tapering