Pinned Repositories
dynamo2m
a bidirectional interface between Dynamo and the Warp-RELION-M pipeline
eulerangles
simplify the handling of large sets of Euler angles in Python
mdocspoofer
spoof mdoc files from tomo5 frames directories
napari-mrcfile-reader
Read MRC format image files into napari using the mrcfile package from CCP-EM
napari-subboxer
napari-workshops
A JupyterBook site for napari workshop materials
napari
napari: a fast, interactive, multi-dimensional image viewer for python
napari-animation
A napari plugin for making animations
fidder
Detect and erase gold fiducials in cryo-EM images
starfile
STAR file I/O in Python
alisterburt's Repositories
alisterburt/autoalign_dynamo
automated on-the-fly tilt-series alignment
alisterburt/dynamo2emClarity
A tool for conversion between subtomogram averaging softwares Dynamo and emClarity
alisterburt/emanjson2imodxf
Convert EMAN2 tilt series alignments to IMOD format
alisterburt/minimal-rich-typer-cli
alisterburt/mpl_animation
Playing with the matplotlib animation framework
alisterburt/emClarity_setup
Takes a set of tilt series aligned in IMOD and prepares the files necessary for emClarity
alisterburt/spsim
single particle image simulation from molecular dynamics trajectories using PARAKEET
alisterburt/warp2relion-tomo
alisterburt/ABTT
Useful tools for cryo-EM/cryo-ET
alisterburt/dask-hpc-example
example of how to parallelise arbitrary work on HPC using dask
alisterburt/mrchead
CLI tool for looking at mrc file headers
alisterburt/napari-etdb
alisterburt/napari-mrcfile
A napari plugin for MRC file IO
alisterburt/peepingtom
Looking at cryo-electron tomography data
alisterburt/amplus-digital-twin
Phantom generator
alisterburt/cgm-remote-monitor
nightscout web monitor
alisterburt/cookiecutter-napari-plugin
Cookiecutter for napari plugins
alisterburt/emfile
Basic utility to read tomography data from files in *.em format.
alisterburt/eralda
it means transform in Basque
alisterburt/freeaps
FreeAPS X - an artificial pancreas system for iOS based on OpenAPS
alisterburt/Loop
An automated insulin delivery app template for iOS, built on LoopKit
alisterburt/loopdocs
Loop Docs - http://loopdocs.org/
alisterburt/meeting-notes
Notes from weekly napari meetings
alisterburt/napari-spot-detection-tutorial
A tutorial on performing spot detection using napari, scikit-image, and scipy
alisterburt/napari.github.io
website for the napari image viewer
alisterburt/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
alisterburt/pathlibls
alisterburt/teamtomo
A collaborative knowledge sharing platform for the cryo-ET community