allanbolipata

Pinned Repositories

ACCESS-Pipeline-1
cfDNA Sequencing Pipeline with UMI
Language:Python00
cbioportal
cBioPortal for Cancer Genomics
Language:JavaScript00
pluto-cwl
CWL workflows for helix filter scripts
Language:Python00
roslin-core
Core of the Roslin pipeline
Language:Python0 0 00
roslin-targeted-variants
Roslin is a portable and reproducible workflow infrastructure for Cancer Genomic Sequencing Analysis
Language:Common Workflow Language00
toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Language:Python0 0 00
lohhla
Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
Language:R29 37 1310
ngs-filters
Filters for false-positive mutation calls in NGS
Language:R30 45 1121
roslin-variant
Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis
Language:Python15 31 828
tempo
CCS research pipeline to process WES and WGS TN pairs
Language:Groovy12 19 4015

allanbolipata's Repositories

allanbolipata/ACCESS-Pipeline-1
cfDNA Sequencing Pipeline with UMI
Language:Python00
allanbolipata/cbioportal
cBioPortal for Cancer Genomics
Language:JavaScript00
allanbolipata/pluto-cwl
CWL workflows for helix filter scripts
Language:Python00
allanbolipata/roslin-core
Core of the Roslin pipeline
Language:Python0 0 00
allanbolipata/roslin-targeted-variants
Roslin is a portable and reproducible workflow infrastructure for Cancer Genomic Sequencing Analysis
Language:Common Workflow Language00
allanbolipata/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Language:Python0 0 00