This repo contains two scripts that can be also used as modules.
BLASTIdentityClust.py:
- Read .fasta files.
- Performs BLAST search.
- Clusters sequences by identity.
pdb2seq.py:
- Extracts sequences from PDB files.
- Performs BLAST search.
- Generates a file with useful data of the protein. Based in ProtParam Tools from Expasy.
- Calculates the extinction coefficient from the sequence.
Contact: yasser.almeida@gmail.com