amkram
Graduate student at UC Santa Cruz - Biomolecular Engineering and Bioinformatics
@corbett-lab Santa Cruz, CA
Pinned Repositories
bash-splash
Display images in a terminal.
evolutionary-image-gen
Genetic algorithm to form n squares into a given image
keep-scrolling
Google Chrome extension that keeps track of how many miles you have scrolled.
lua-HMM
A proof-of-concept n-order Hidden Markov Model with Viterbi decoding, implemented in Lua
panmap
🧬 🌲 A phylo-pangenomic genome assembler. Genotyping guided by pangenome trees.
schedule-builder-export
Chrome extension to automatically export UCD Schedule Builder Calendars to Google Calendar
shusher
Private, browser-based placement of genome sequences on phylogenetic trees using UShER.
parsimony
corbett-lab.github.io
beyond-phylogenies-team6
amkram's Repositories
amkram/shusher
Private, browser-based placement of genome sequences on phylogenetic trees using UShER.
amkram/schedule-builder-export
Chrome extension to automatically export UCD Schedule Builder Calendars to Google Calendar
amkram/oneTBB-2019-wasm
amkram/panmap
🧬 🌲 A phylo-pangenomic genome assembler. Genotyping guided by pangenome trees.
amkram/CADMS-ASF-website
amkram/chromatone
amkram/dotfiles
:wrench: .files, including ~/.macos — sensible hacker defaults for macOS
amkram/haplotype-compression
amkram/lsd2
A phylogeny dating method using least-squares algorithms and criteria
amkram/matreePy
Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit (In Development)
amkram/mkmh
Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
amkram/MuseScore
MuseScore is an open source and free music notation software. For support, contribution, bug reports, visit MuseScore.org. Fork and make pull requests!
amkram/nextclade
Viral genome alignment, clade assignment, mutation calling, and quality checks
amkram/Nucleus
The Ultimate IDE for Bioinformaticians
amkram/p4-guide
Guide to p4lang repositories and some other public info about P4
amkram/pangraph-tree
fork of neherlab/pangraph
amkram/parsimony
amkram/parsimony-2
amkram/parsimony-lfs
amkram/snake
amkram/snippets
Short snippets of useful code (mostly comp bio stuff)
amkram/taxonium
Explore very large trees in the browser
amkram/te-compart
amkram/testing
amkram/testt
amkram/tmp
amkram/uc-computing-scholars
amkram/usher
Ultrafast Sample Placement on Existing Trees
amkram/usher_wiki
docs holder for usher wiki
amkram/wasmosis