amkram

amkram's Stars

• cademirch/clam

  Language:Rust1

• cademirch/russell-lab-bioinfo-basics

  hi

  Language:Shell1

• statsim/preview

  Preview large text files online

  Language:HTML51

• taybenlor/runno

  Sandboxed runtime for programming languages and WASI binaries. Works in the browser or on your server.

  Language:TypeScript64629

• cademirch/snakemake-phoenix-demo

  Language:Python1

• lilymaryam/tb_phylogeny

  Language:Python1

• beling/impartial-games

  Rust software for solving impartial games.

  Language:Rust3

• t4ccer/cgt-tools

  Combinatorial Game Theory toolkit

  Language:Rust71

• Autoplectic/ludology

  Ludology is a Python package for combinatorial game theory.

  Language:Python94

• amkram/panmap

  🧬 🌲 Pangenome phylogenetic placement + read alignment + genotyping

  Language:C++1

• biowasm/aioli

  Framework for building fast genomics web tools with WebAssembly and WebWorkers

  Language:JavaScript11110

• vgteam/sequenceTubeMap

  displays multiple genomic sequences in the form of a tube map

  Language:JavaScript18627

• a-n-t-h-o-n-y/TermOx

  C++17 Terminal User Interface(TUI) Library.

  Language:C++68847

• dmackdev/egui_json_tree

  An interactive JSON tree visualiser for egui, with search and highlight functionality.

  Language:Rust674

• Adanos020/egui_dock

  Docking support for egui – an immediate-mode GUI library for Rust

  Language:Rust47276

• bernsteining/egui_nerdfonts

  Nerdfonts icons for egui

  Language:Rust189

• musescore/MuseScore

  MuseScore is an open source and free music notation software. For support, contribution, bug reports, visit MuseScore.org. Fork and make pull requests!

  Language:C++12.5k2.7k

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++2k335

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.7k582

• cuthbertLab/music21

  music21 is a Toolkit for Computational Musicology

  Language:Python2.2k406

• shlokanegi/ErrorSimulator_UShER_SARSCoV2

  A simulation platform that tries incorporating realistic errors into simulated SARS-CoV-2 genomes.

  Language:Python21

• theosanderson/genomium

  A portal for a set of microbial sequence tools

  Language:JavaScript2

• theosanderson/deeperseq

  Browse FASTQs for SARS-CoV-2 genomes from the SRA/ENA

  Language:JavaScript61

• russcd/Ancestry_HMM

  Language:C2710

• openjournals/joss-papers

  Accepted JOSS papers

  Language:HTML26122

• chanzuckerberg/galago

  Interpretation aids for genomic epidemiology

  Language:TypeScript83

• iqtree/iqtree2

  NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

  Language:C++26058

• NCBI-Codeathons/beyond-phylogenies-team6

  Language:Python5

• 0xAX/linux-insides

  A little bit about a linux kernel

  Language:Python30.2k3.4k

• cademirch/cool_encoder

  Language:Python21