arianna-smith

Pinned Repositories

Freyja
Depth-weighted De-Mixing
Language:HTML106 13 14530
Freyja-data
Previous versions of Freyja barcodes and metadata files
Language:Python4 7 10
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:HTML00
ncov-tools
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
Language:Python00
pango-designation
Repository for suggesting new lineages that should be added to the current scheme
Language:Python00
fieldbioinformatics
The ARTIC field bioinformatics pipeline
Language:Python117 15 7667
CDPHE-influenza
Workflows and scripts for the assembly and analysis of influenza whole genome amplicon sequencing.
Language:WDL2 1 131
CDPHE-SARS-CoV-2
Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.
Language:WDL5 1 360
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:JavaScript1.2k 35 1.7k606
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:Dockerfile197 12 368126

arianna-smith's Repositories

arianna-smith/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:HTML00
arianna-smith/ncov-tools
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
Language:Python00
arianna-smith/pango-designation
Repository for suggesting new lineages that should be added to the current scheme
Language:Python00