arnscott

arnscott's Stars

• godotengine/godot

  Godot Engine – Multi-platform 2D and 3D game engine

  Language:C++90.3k1.5k53k21k

• leptos-rs/leptos

  Build fast web applications with Rust.

  Language:Rust16.2k901k635

• launchbadge/sqlx

  🧰 The Rust SQL Toolkit. An async, pure Rust SQL crate featuring compile-time checked queries without a DSL. Supports PostgreSQL, MySQL, and SQLite.

  Language:Rust13.3k631.9k1.3k

• py-why/dowhy

  DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.

  Language:Python7.1k138475927

• interpretml/interpret

  Fit interpretable models. Explain blackbox machine learning.

  Language:C++6.3k144446726

• ossu/bioinformatics

  :microscope: Path to a free self-taught education in Bioinformatics!

  5.4k36524909

• christophM/interpretable-ml-book

  Book about interpretable machine learning

  Language:Jupyter Notebook4.8k1382051.1k

• petgraph/petgraph

  Graph data structure library for Rust.

  Language:Rust2.9k36312340

• sarah-ek/faer-rs

  Linear algebra foundation for the Rust programming language

  Language:Rust1.8k177461

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k261k346

• tafia/quick-xml

  Rust high performance xml reader and writer

  Language:Rust1.2k15420235

• py-why/causal-learn

  Causal Discovery in Python. It also includes (conditional) independence tests and score functions.

  Language:Python1.2k16104190

• holoviz/hvplot

  A high-level plotting API for pandas, dask, xarray, and networkx built on HoloViews

  Language:Python1.1k25804108

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python5831012861

• zqfang/GSEApy

  Gene Set Enrichment Analysis in Python

  Language:Python55611199116

• YingfanWang/PaCMAP

  PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure

  Language:Jupyter Notebook521116353

• hetio/hetionet

  Hetionet: an integrative network of disease

  Language:HTML260154668

• biocypher/biocypher

  A unifying framework for biomedical research knowledge graphs

  Language:Python218831630

• noriakis/ggkegg

  Analyzing and visualizing KEGG information using the grammar of graphics

  Language:R21073815

• MannLabs/alphatims

  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

  Language:Python81123725

• wfondrie/depthcharge

  A deep learning toolkit for mass spectrometry

  Language:Python64101719

• MannLabs/alphadia

  modular & open DIA search

  Language:Jupyter Notebook469553

• MannLabs/directlfq

  Fast and accurate label-free quantification for small and very large numbers of proteomes

  Language:Jupyter Notebook404275

• wilhelm-lab/oktoberfest

  Rescoring and spectral library generation pipeline for proteomics.

  Language:Python334818

• YuanyueLi/MSEntropy

  Spectral entropy for mass spectrometry data.

  Language:Python24206

• MannLabs/timsrust

  Language:Rust22459

• MannLabs/alpharaw

  An open-source Python package to unify raw MS data accession and storage.

  Language:Jupyter Notebook169193

• YuanyueLi/FlashEntropySearch

  Flash entropy search

  Language:Jupyter Notebook13131

• InfectionMedicineProteomics/DPKS

  Data Processing Kitchen Sink for proteomics data

  Language:Jupyter Notebook82132

• biorack/blink

  Language:Jupyter Notebook7942