Pinned Repositories
AFQ-Browser
Browser-based visualization tools for AFQ results
lowess
A Python implementation of the lowess algorithm
popylar
pubmed-gpt
Use gpt to summarize abstracts for a pubmed query
python-matlab-bridge
A simple Python => MATLAB(R) interface and a matlab_magic for ipython
try-tf
Simple code for trying out TensorFlow with simulated datasets
dipy
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
nitime
Timeseries analysis for neuroscience data
popylar
pyAFQ
Automated Fiber Quantification ... in Python
arokem's Repositories
arokem/visual-white-matter
Application of diffusion MRI and fiber tractography to vision science
arokem/pymed
PyMed is a Python library that provides access to PubMed.
arokem/act_synthseg
arokem/ajile12-nwb-data
arokem/app-pyafq-segment
arokem/autofq-hub
Configuration for jupyterhub
arokem/azure_batch_pyAFQ
Environment and scripts for Azure Batch demo with Python
arokem/bids-website
Website for the Brain Imaging Data Structure standard.
arokem/brainsprite
Brainsprite turns a sprite of brain slices into a 3D interactive web viewer
arokem/default-hub-homepage
Custom templates for JupyerHub
arokem/fracridge
Fractional ridge regression
arokem/freesurfer
Neuroimaging analysis and visualization suite
arokem/geometry
Calculating geometric things
arokem/GLMsingle
A toolbox for accurate single-trial estimates in fMRI time-series data
arokem/graph-stats-book
arokem/HackWeek-Toolkit
A toolkit to get you started with organizing your own hack week!
arokem/hbn-pod2-paper
arokem/js4ds
JavaScript for Data Science
arokem/kbatch
arokem/mri2mri
arokem/my_better_paper
This one puts all questions to rest
arokem/my_project
arokem/nilearn
Machine learning for NeuroImaging in Python
arokem/nobrainer
A framework for developing neural network models for 3D image processing.
arokem/qsiqc
A tool to predict quality control (QC) ratings for preprocessed diffusion MRI data from QSIPrep output.
arokem/rockets
Software library to design rockets (and launch them)
arokem/skmediate
arokem/SynthSeg
Contrast-agnostic segmentation of MRI scans
arokem/testy
arokem/tigermilk