arovai's Stars
ANTsX/ANTsPy
A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.
ANTsX/ANTs
Advanced Normalization Tools (ANTs)
bids-standard/pybids
Python tools for querying and manipulating BIDS datasets.
nipreps/niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
PennLINC/qsiprep
Preprocessing of diffusion MRI
freesurfer/freesurfer
Neuroimaging analysis and visualization suite
nipy/heudiconv
Flexible DICOM conversion into structured directory layouts
nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
poldracklab/pydeface
defacing utility for MRI images
poldracklab/fitlins
Fit Linear Models to BIDS Datasets
rordenlab/dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
bids-apps/example
This an example app that can serve as a template.
nipy/nipype
Workflows and interfaces for neuroimaging packages
poldracklab/ds003-post-fMRIPrep-analysis
An exemplary task analysis workflow to run on OpenNeuro's ds000003 data, after preprocessing with fMRIPrep
ReproNim/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
wshanks/tbkeys
Custom keybindings for Thunderbird