ashuein
I work in the area of Computational Biology and Mathematical modelling as a PhD student. Writing codes and watching computers obey you is an awesome experience
Indian Institute of Technology, New DelhiNew Delhi, India
Pinned Repositories
500-AI-Machine-learning-Deep-learning-Computer-vision-NLP-Projects-with-code
500 AI Machine learning Deep learning Computer vision NLP Projects with code
awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
awesome-math
A curated list of awesome mathematics resources
awesome-network-analysis
A curated list of awesome network analysis resources.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
biotools
A list of useful bioinformatics resources
choose
A human-friendly and fast alternative to cut and (sometimes) awk
Cluster_Ensembles
A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a consensus clustering is reformulated in terms of approximation algorithms for graph or hyper-graph partitioning.
ClusterEnsembles
A Python package for cluster ensembles
dgl
Python package built to ease deep learning on graph, on top of existing DL frameworks.
ashuein's Repositories
ashuein/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
ashuein/Cluster_Ensembles
A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a consensus clustering is reformulated in terms of approximation algorithms for graph or hyper-graph partitioning.
ashuein/pylustrator
Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code.
ashuein/rsmf
Right-size my figures
ashuein/atpbar
Progress bars for threading and multiprocessing tasks on terminal and Jupyter Notebook
ashuein/BEAVR
BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data
ashuein/BioBlender21
Blender plugin to process biological data and molecular work.
ashuein/CANA
CANAlization: Control & Redundancy in Boolean Networks
ashuein/ComBat-seq
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
ashuein/ctv-optimization
Optimization Task View
ashuein/Gradianto
Gradianto aims to be easy on the eyes while being colorful and bright. Gradianto is the winner of Intellij theme contest 2019 Hosted by JetBrains https://plugins.jetbrains.com/plugin/12334-gradianto
ashuein/Invisibility_Cloak
This is a fun application of image processing which enables you to experience the magic of an invisibility cloak. Let's make our childhood fantasy of using an invisibility cloak come true.
ashuein/lyra
An interactive, graphical Visualization Design Environment (VDE)
ashuein/NetProphet_2.0
A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
ashuein/noisy-networks-measurements
Noisy network measurement with stan
ashuein/Nuitka
Nuitka is a Python compiler written in Python. It's fully compatible with Python 2.6, 2.7, 3.3, 3.4, 3.5, 3.6, 3.7, and 3.8. You feed it your Python app, it does a lot of clever things, and spits out an executable or extension module.
ashuein/OpenWorkstation_hardware
ashuein/OTTO
The Open-Source and Affordable Liquid Handler for Automated Micropipetting
ashuein/parmigene
Parallel Mutual Information estimation for Gene Network reconstruction
ashuein/pathos
parallel graph management and execution in heterogeneous computing
ashuein/Proton
Compatibility tool for Steam Play based on Wine and additional components
ashuein/qmlbook
The source code for the upcoming qml book
ashuein/sage
Mirror of the Sage source tree -- please do not submit PRs here -- everything must be submitted via https://trac.sagemath.org/
ashuein/scientific-visualization-book
❗️WIP❗️An open access book on scientific visualization using python and matplotlib
ashuein/seaborn-data
Data repository for seaborn examples
ashuein/snap
Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.
ashuein/spyder
Official repository for Spyder - The Scientific Python Development Environment
ashuein/Spyder-Color-Themes
Color Themes for Spyder (https://github.com/spyder-ide/spyder)
ashuein/sra-explorer
Web application to explore the Sequence Read Archive.
ashuein/SynBioPython
General low-level API