ashuein
I work in the area of Computational Biology and Mathematical modelling as a PhD student. Writing codes and watching computers obey you is an awesome experience
Indian Institute of Technology, New DelhiNew Delhi, India
Pinned Repositories
500-AI-Machine-learning-Deep-learning-Computer-vision-NLP-Projects-with-code
500 AI Machine learning Deep learning Computer vision NLP Projects with code
awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
awesome-math
A curated list of awesome mathematics resources
awesome-network-analysis
A curated list of awesome network analysis resources.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
biotools
A list of useful bioinformatics resources
choose
A human-friendly and fast alternative to cut and (sometimes) awk
Cluster_Ensembles
A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a consensus clustering is reformulated in terms of approximation algorithms for graph or hyper-graph partitioning.
ClusterEnsembles
A Python package for cluster ensembles
dgl
Python package built to ease deep learning on graph, on top of existing DL frameworks.
ashuein's Repositories
ashuein/sunbeam
SuNBEaM, (s)pectral (n)on-(b)acktracking (e)igenvalue pseudo-(m)etric, a topological graph distance
ashuein/debrowser
Differential Count Data Analysis Toolbox
ashuein/PNC
The PNC package is to identify personalized driver genes of an individual patient by using network control principle .
ashuein/disparity_filter
Implements a disparity filter in Python, based on graphs in NetworkX, to extract the multiscale backbone of a complex weighted network (Serrano, et al., 2009)
ashuein/PyCX
PyCX is a Python-based sample code repository for complex systems research and education.
ashuein/jax
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
ashuein/line_profiler
(OLD REPO) Line-by-line profiling for Python - Current repo ->
ashuein/netpy
NetPy '19: Introduction to Network Analysis in Python
ashuein/tabula-py
Simple wrapper of tabula-java: extract table from PDF into pandas DataFrame
ashuein/machine-learning-systems-design
A booklet on machine learning systems design with exercises
ashuein/ProteoClade
ashuein/networkinterpolation
code and formatted datasets for the paper "Network Interpolation" by Thomas Reeves, Anil Damle, and Austin R. Benson
ashuein/Laplacians.jl
Algorithms inspired by graph Laplacians: linear equation solvers, sparsification, clustering, optimization, etc.
ashuein/DiabeTracker
Diabetes Management Android App
ashuein/ClaraGenomicsAnalysis
SDK for GPU accelerated genome assembly and analysis
ashuein/DeepSyn
ashuein/snap-python
SNAP Python code, SWIG related files
ashuein/infomap
Multi-level network clustering based on the Map equation
ashuein/clustergrammer-widget
The Clustergrammer interactive Jupyter notebook widget
ashuein/yabox
Yet another black-box optimization library for Python
ashuein/cdlib
Community Discovery Library - (for networkx and igraph)
ashuein/GenLouvain
A generalized Louvain method for community detection implemented in MATLAB
ashuein/PyDTMC
A framework for discrete-time Markov chains analysis.
ashuein/DryNetMC
Modeling and characterizing dynamic gene regulatory networks underlying cancer drug resistance based on time course RNA-seq data
ashuein/graphmap2
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/720458v1
ashuein/targetDB
TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available about potential targets
ashuein/genegraphics
A web-based tool for creating customized visualizations of genomic neighborhoods for use in publications
ashuein/scikit-mobility
scikit-mobility: mobility analysis in Python
ashuein/MultiscaleCentrality
Graph centrality is a question of scale
ashuein/NOCAD
NOCAD - Network based Observability and Controlability Analysis of Dynamical Systems toolbox for MATLAB and Octave