atks/vt

Issues

• Uniq does not take into account SVLEN (Symbolic variants)

  #123 opened 9 months ago by davmlaw
  0

• Can't install vt on cluster

  #122 opened a year ago by boutrys
  0

• Error installing vt in conda environment

  #121 opened a year ago by jcasadogp
  0

• New release

  #120 opened 2 years ago by serge2016
  1

• Does or can Vt provide a 'compose_blocksub' feature?

  #119 opened 3 years ago by rhdolin
  1

• peek list classfication for every variants

  #118 opened 3 years ago by Zhuxitong
  0

• error while loading shared libraries: libcrypto.so.3: cannot open shared object file: No such file or directory

  #117 opened 3 years ago by AJFeng
  1

• Make a new release?

  #85 opened 7 years ago by tseemann
  6

• Version needs to be bumped

  #116 opened 4 years ago by davmlaw
  1

• VT rminfo get's killed

  #115 opened 4 years ago by violetbrina
  0

• Error with installation

  #113 opened 4 years ago by sigven
  11

• "decompose_blocksub -a" position indel issue

  #114 opened 4 years ago by m-blanes
  0

• Patches from Debian

  #112 opened 5 years ago by frikiluser
  5

• vt cannot retrieve sequences from my reference sequence file

  #84 opened 7 years ago by alrafaykhan
  4

• Way to list all available tools in vt from command line?

  #92 opened 5 years ago by tseemann
  5

• vt decompose -s not decomposing TOPMED info field

  #111 opened 5 years ago by roryk
  2

• "bcf_synced_reader.h:108 operator()" error wen using vt sort

  #110 opened 5 years ago by estolle
  0

• "bcf_fmt_array" error

  #102 opened 5 years ago by ycl6
  5

• make error, /tmp/ccB26cYJ.s: Assembler messages

  #108 opened 5 years ago by winni-liu
  0

• "make" cmd fails due to: /usr/bin/ld: cannot find -lcurl

  #107 opened 5 years ago by attilagk
  0

• cannot find -lcurl and -lcrypto

  #106 opened 5 years ago by rfakoya
  1

• Potential bug in LogTool::prob2pl

  #105 opened 5 years ago by dwuab
  0

• lib/Rmath/bessel_i.c error

  #103 opened 5 years ago by YT-er
  1

• installation problem on RHEl 5.5

  #72 opened 5 years ago by bioinfo-dirty-jobs
  4

• Mac install, Homebrew failing, make failing on lzma.h

  #83 opened 7 years ago by MartinPersida
  5

• Vt norm Failed to open fasta file

  #81 opened 5 years ago by WesDe
  3

• vt partition error with GATK vcf

  #82 opened 5 years ago by MarisaMiller
  2

• -lcrypto issue abort make

  #90 opened 5 years ago by sbridel
  3

• Consecutive SNPs

  #98 opened 5 years ago by nurmians
  1

• bioconda install broken error while loading shared libraries: libcrypto.so.1.0.0:

  #99 opened 5 years ago by huguesfontenelle
  2

• vt peek enhancement

  #100 opened 6 years ago by darked89
  1

• annotate_db_rsid command not found

  #97 opened 6 years ago by marcora
  1

• decompose_blocksub cannot handle REF properly

  #96 opened 6 years ago by Fohlen
  0

• Unable to parse the VCF 4.2 specification example VCF

  #95 opened 6 years ago by 13am
  0

• vt estimate converts QUAL to '-nan' for multi-allelic sites

  #94 opened 6 years ago by oleraj
  0

• compilation error: "/usr/bin/ld: cannot find -lcurl"

  #93 opened 7 years ago by yjx1217
  1

• brew install Brewsci/bio/vt instead of brew install Homebrew/science/vt

  #91 opened 7 years ago by sbridel
  1

• smart decomposition does not export AD for multiallelic variant

  #88 opened 7 years ago by wangshu84
  8

• Can it call tetraploid variants?

  #89 opened 7 years ago by afzm
  3

• Decomposition of multi-allellic loci lose Number=G type INFO fields

  #87 opened 7 years ago by mmoisse
  5

• option missing to configure installation directory from source

  #86 opened 7 years ago
  4

• vt sort does not output expected file if -m full

  #80 opened 7 years ago by tdelhomme
  8

• VCF is truncated if input not sorted

  #79 opened 7 years ago by tdelhomme
  4

• Make error in CentOS 6.9

  #76 opened 7 years ago by maryawood
  2

• Erroneous left-trimming of complex alleles

  #74 opened 8 years ago by selkovjr
  3

• AF field is lost after decomposition of multi-allelic sites

  #73 opened 8 years ago by mbootwalla
  4

• issue with compile

  #71 opened 8 years ago by rebzzy
  2

• Make issue - fatal error 'lzma.h' file not found

  #70 opened 8 years ago by ehitchcock
  3

• Make error (lzma.h: No such file or directory)

  #68 opened 8 years ago by galaxyrise
  2

• make issue with svm_train.cpp

  #69 opened 8 years ago by galaxyrise
  2