b2slab/FELLA

Issues

• Shiny App Issues

  #25 opened a year ago by infinity-a11y
  0

• How to disable module, enzyme, and gene names in the network?

  #24 opened 2 years ago by YonghuiDong
  2

• Multiplicity correction for pathway enrichment not working in enrich function for hypergeometric analysis

  #16 opened 2 years ago by billy-s-lab
  1

• buildGraphFromKEGGREST can't work

  #23 opened 2 years ago by wuzeming
  3

• Expand pathway databases

  #22 opened 2 years ago by DeniseSl22
  1

• diffusion enrichment with custom background metabolite set.

  #21 opened 3 years ago by RolandTengolics
  3

• how to correct for multiple testing with p.scores using diffusion method

  #19 opened 3 years ago by mingwhy
  1

• I do not get all "hsa" compounds from KEGG

  #20 opened 3 years ago by Francisco-madrid-gambin
  3

• Let user decide level of filtering

  #18 opened 4 years ago by SergiPicart
  0

• Error in double(n.nodes) : object 'n.nodes' not found - when running pagerank

  #17 opened 4 years ago by SergiPicart
  0

• Convenient function to retrieve compounds belonging to a pathway

  #14 opened 4 years ago by SergiPicart
  3

• HTTP 404 error

  #15 opened 4 years ago by MSCTR
  2

• getBackground() should give all the compounds if no background was specified

  #13 opened 4 years ago by SergiPicart
  0

• Export GO term similarity tables

  #12 opened 4 years ago by SergiPicart
  0

• plotGRaph option for labels

  #11 opened 5 years ago by kunstner
  1

• GO labels crash in the shiny app

  #10 opened 5 years ago by SergiPicart
  0

• Some organisms still give 404 after KEGG REST API update

  #9 opened 5 years ago by SergiPicart
  1

• KEGGREST 404 on KEGG modules

  #8 opened 5 years ago by SergiPicart
  1

• Knowledge graph filtering options

  #7 opened 6 years ago by SergiPicart
  0

• Interactive plots in console mode

  #6 opened 6 years ago by SergiPicart
  0

• UNIPROT ids

  #5 opened 6 years ago by SergiPicart
  0

• Intermediate table format

  #4 opened 6 years ago by SergiPicart
  0

• Generate database from the shiny app

  #3 opened 6 years ago by SergiPicart
  0

• Add DT in suggests

  #2 opened 6 years ago by SergiPicart
  0

• Table error with shiny app and hypergeom test

  #1 opened 6 years ago by SergiPicart
  0