Pinned Repositories
Bisulfite-Seq
Scripts related to processing of bisulfite sequencing data
house_prices_RF
Random Forest practice using house price data from kaggle
RNAseq_snakemake
Snakemake pipeline of bulk RNAseq data
annotateRegions
annotate a bed file of target regions using a gtf file
ATACseq
Scripts and Functions related to ATACseq data analysis
atacseq_snakemake
ba-davis.github.io
my academic website using Jekyll
bioinfo_scripts
Collection of frequently used bioinformatics scripts and functions
chipseq_snakemake
FQC_Trim_Align_Scripts
Bash scripts for beginning stages of sequencing data analysis, including FastQC, Trimming, and Alignment, via SLURM workload manager.
ba-davis's Repositories
ba-davis/gatk_vcf
Snakemake pipeline for GATK variant calling
ba-davis/wgbs_pe_snakemake
Snakemake for wgbs pe data analysis
ba-davis/rrbs_pe_snakemake
Snakemake pipeline for RRBS PE data
ba-davis/RNAseq_snakemake
Snakemake pipeline of bulk RNAseq data
ba-davis/scRNAseq_snakemake
ba-davis/chipseq_snakemake
ba-davis/PSI_final_models
Final LASSO regression models for predicting smoking status from placental DNA methylation data
ba-davis/placenta_smoking_index
ba-davis/atacseq_snakemake
ba-davis/RNAseq
Code related to bulk RNAseq analysis
ba-davis/bioinfo_scripts
Collection of frequently used bioinformatics scripts and functions
ba-davis/ATACseq
Scripts and Functions related to ATACseq data analysis
ba-davis/FQC_Trim_Align_Scripts
Bash scripts for beginning stages of sequencing data analysis, including FastQC, Trimming, and Alignment, via SLURM workload manager.
ba-davis/Methylation_Analysis_Scripts
ba-davis/annotateRegions
annotate a bed file of target regions using a gtf file
ba-davis/TCGA-LAML-RNAseq
Illumina HiSeq RNAseq data for TCGA Acute Myeloid Leukemia
ba-davis/house_prices_RF
Random Forest practice using house price data from kaggle
ba-davis/Bisulfite-Seq
Scripts related to processing of bisulfite sequencing data
ba-davis/ThinkStats2
Text and supporting code for Think Stats, 2nd Edition
ba-davis/vnowchi
A Copy Number Variant Calling Pipeline
ba-davis/ba-davis.github.io
my academic website using Jekyll
ba-davis/hello-world
Practice