The Walter and Eliza Hall Institute of Medical Research
Bahlo laboratory statistical genetics software development
The Walter & Eliza Hall Institute of Medical Research, Melbourne, Australia
Pinned Repositories
Bio-STR-exSTRa
Prepare BAM/CRAM for exSTRa R package
bioinfotools
Documenting usage and experience with bioinformatic tools
cavalier
cavalier: Candidate Variant List Evaluation Report
exSTRa
Expanded STR algorithm for Illumina sequencing data
Genes4Epilepsy
A curated list of monogenic epilepsy genes
isoRelate
Performs pairwise identity by descent analysis on haploid recombining organisms in the presence of multiclonal infections using SNP genotype data
moimix
R package for inferring multiple infections from high-throughput sequencing data
pf_variant_calling_pipeline
A bpipe pipeline for processing WGS from Plasmodium facliparum
RepeatExpansionDatabase
superSTR
A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
The Walter and Eliza Hall Institute of Medical Research's Repositories
bahlolab/bioinfotools
Documenting usage and experience with bioinformatic tools
bahlolab/pf_variant_calling_pipeline
A bpipe pipeline for processing WGS from Plasmodium facliparum
bahlolab/isoRelate
Performs pairwise identity by descent analysis on haploid recombining organisms in the presence of multiclonal infections using SNP genotype data
bahlolab/moimix
R package for inferring multiple infections from high-throughput sequencing data
bahlolab/cluster_benchmark_data
bahlolab/brain_scRNAed
RNA editing in single brain cells
bahlolab/XIBD
An R package to perform relatedness mapping between pairs of individuals from SNP data
bahlolab/PlasmoSTR
bahlolab/R_teaching_materials
bahlolab/Bio-SNP-TOPBOT
Bio::SNP::TOPBOT, Perl module to determine strand of single nucleotide polymorphisms (SNPs) using Illumina's TOP/BOT designation.
bahlolab/DatingRareMutations
Dating Rare Mutations from Small Samples with Dense Marker Data
bahlolab/containers
Base containers useful for building containers for pipelines
bahlolab/cyp2d6-laa-benchmark
bahlolab/linkrvis
:bar_chart: Visualise results from genetic linkage analysis software
bahlolab/MixInfect
Detect mixed infections in TB
bahlolab/npwg-guides
Example Nextflow pipeline for NPWG
bahlolab/panelappR
An R package to intefrace with the PanelApp API
bahlolab/phiRworkshop2016
:fire: R workshop series for WEHI PHI division
bahlolab/QuaCK
Quality Control Summary Pipeline for Array-based Genome Studio Projects (idats, raw genotype quality)
bahlolab/r_oop
Object oriented programming in R
bahlolab/r_pkg_doc
Usage documentation of R packages
bahlolab/STR_Expansions_Example_Workflow
Example workflow demonstrating how to search for STR expansions using next-generation sequencing data
bahlolab/ukbRRR
bahlolab/utils
Various scripts
bahlolab/varpr
R package for Mendelian variant prioritisation based on in-house MPS pipeline