Pinned Repositories
apples
distance based phylogenetic placement
DTU-02561-OpenGL-ComputerGraphics
Exercises, Project and report of OpenGL projects
LSEdiag
Identify leaves that disrupt additivity
misa
mixed sample analysis
sepp
snakemake-tutorial2
Short snakemake tutorial
Tree-Based-Clustering-Paper
uDance
TreeCluster
Efficient phylogenetic clustering of viral sequences
hatchet
HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.
balabanmetin's Repositories
balabanmetin/uDance
balabanmetin/apples
distance based phylogenetic placement
balabanmetin/misa
mixed sample analysis
balabanmetin/snakemake-tutorial2
Short snakemake tutorial
balabanmetin/misa-data
Data & Scripts used in paper "Phylogenetic double placement of mixed samples"
balabanmetin/apples2-data
balabanmetin/uDance-legacy
balabanmetin/bac10
balabanmetin/balabanmetin.github.io
balabanmetin/compareTrees
The MicrobesOnline tree comparison tool
balabanmetin/cpython
The Python programming language
balabanmetin/cse282
balabanmetin/FastLoo
Subquadratic leave-one-out outlier detection via a APPLES-2
balabanmetin/gg2_protocols
balabanmetin/hatchet
HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.
balabanmetin/hgt_simulation
balabanmetin/mainlines
quickly reduce MSA size by removing low-diversity sequences
balabanmetin/newCNbulk
balabanmetin/raxml-ng
RAxML Next Generation: faster, easier-to-use and more flexible
balabanmetin/reference_flow
Reducing reference bias using multiple population reference genomes
balabanmetin/sepp-1
Ensemble of HMM methods (SEPP, TIPP, UPP)
balabanmetin/SkmerExtended_Tool
balabanmetin/snakemake-tutorial
balabanmetin/tk4-evol-sim
Simulates two genomes that evolve under TK4 model of evolution
balabanmetin/tools
Sorts of tools
balabanmetin/tools-1
A collection of command-line tools I wrote to make various repetitive tasks more convenient
balabanmetin/udance-data
Data for uDance paper
balabanmetin/uDance-figures
R script and data
balabanmetin/wol2-16k-data
balabanmetin/yeast-genomes
genomes of pure and hybrid yeast species & gold standard phylogeny of pure species