balabanmetin

balabanmetin's Stars

• huggingface/transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python133k1.1k15.8k26.5k

• rclone/rclone

  "rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Azure Blob, Azure Files, Yandex Files

  Language:Go46.4k5765.5k4.2k

• facebook/zstd

  Zstandard - Fast real-time compression algorithm

  Language:C23.4k4091.4k2.1k

• TheLastGimbus/GooglePhotosTakeoutHelper

  Script that organizes the Google Takeout archive into one big chronological folder

  Language:Dart3.9k44202190

• broadinstitute/cromwell

  Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

  Language:Scala9891112.9k358

• marbl/CHM13

  The complete sequence of a human genome

  909689498

• mxmlnkn/ratarmount

  Access large archives as a filesystem efficiently, e.g., TAR, RAR, ZIP, GZ, BZ2, XZ, ZSTD archives

  Language:Python7091911536

• brentp/cyvcf2

  cython + htslib == fast VCF and BCF processing

  Language:Cython370721572

• ekimb/rust-mdbg

  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

  Language:Rust17482718

• inab/trimal

  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

  Language:C++170117041

• jdrch/Hardware

  The devices I have, what runs on them, their configurations, issues, solutions, and associated projects

  16853179

• kjn/lbzip2

  Parallel bzip2 utility

  Language:C131133017

• chaoszhang/ASTER

  Accurate Species Tree EstimatoR series: a family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL)

  Language:C++9143010

• niemasd/TreeCluster

  Efficient phylogenetic clustering of viral sequences

  Language:Python733109

• calasanmarko/TurboMac

  Stops CPU throttling on Intel-based Macs

  Language:Shell624197

• dstein64/kmeans1d

  A Python package for optimal 1D k-means clustering.

  Language:C++49788

• dkoslicki/CMash

  Fast and accurate set similarity estimation via containment min hash

  Language:Python429319

• biocore/wol

  Reference Phylogeny for Bacterial and Archaeal Genomes

  Language:Jupyter Notebook2510218

• rmenegaux/fastDNA

  Language:C++2413

• dkoslicki/MinHashMetagenomics

  Fast approximation of similarity for sets of very different sizes

  Language:Python20711

• xflouris/newick-tools

  Visualize and perform a multitude of operations on newick files

  Language:C165194

• yueyujiang/DEPP

  Language:Python16225

• noraracht/CONSULT

  Accurate contamination removal using locality-sensitive hashing

  Language:C++143102

• phylo42/PEWO

  Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees

  Language:Python124159

• blobtoolkit/pipeline

  [Archived] SnakeMake pipeline to run BlobTools on public assemblies

  Language:Python103264

• bsipos/phylosim

  An R package for the Monte Carlo simulation of sequence evolution

  Language:R7321

• maryamrabiee/INSTRAL

  Discordance-aware Phylogenetic Placement using Quartet Scores

  Language:Java5271

• danydoerr/spp_dcj

  Language:C++3100

• elkebir-group/CNRein

  Single-Cell Copy Number Calling with Evolution-Aware Deep Reinforcement Learning

  Language:Python11

• sachacoesel/PPLACER

  Language:Shell1000