BEDApub
Roche Pharma Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Grenzacherstrasse 124, 4070 Basel
Pinned Repositories
besca
BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
besca_publication_results
bescape
BESCApe is a cell deconvolution package.
bios-to-go
Static files of the BIOS, aka Bioinfo-C, library
designit
Blocking and randomization for experimental design
GeMS
Gene set management system based on a MongoDB backend
microbiome10XVisium
PMDA-Summer-School
Public website of Roche PMDA Summer School
space-microbe
splicekit
splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq
BEDApub's Repositories
bedapub/roger
Understand gene expression regulation with ROGER (Roche Omnibus of Gene Expression Regulation)
bedapub/PD1-IL2v_in-vivo_TILs_Panc02_publication
This repository includes notebooks utilized to produce results for the publication on the PD1-IL2v in vivo PancO2 study (TIL scRNA-seq analysis).
bedapub/2022-07-ShellLessonData
Shell lesson data
bedapub/geneocr-ui
bedapub/geneocr-api
bedapub/Publication_TYRP1TCB_antiPDL1
This repository contains the R scripts to generate 1000 virtual patients, simulate their expected tumor growth profile, and evaluate it using RECIST v1.1, outputting ORR, DoR and PFS
bedapub/metadata-registration-lib
Library for the metadata-registration tools.
bedapub/ribiosIO
File input and output module of the ribios suite
bedapub/ribiosGraph
Tools to manipulate and visualize graph objects in the RIBIOS software suite
bedapub/ribiosArg
ribiosArg handles arguments for command-line, stand-alone R programs
bedapub/besca_publication_results
bedapub/study-state-machine
bedapub/besca_publication_signature_validation
Signature validation for the BESCA publication
bedapub/ribiosROGER
Functions to read from and write to the ROGER database
bedapub/ribiosBioMart
Functions to access local installations of the BioMart database
bedapub/bescape
BESCApe is a cell deconvolution package.
bedapub/GeoWizard
GeoWizard