Pinned Repositories
contemplate
drosophila-transposons
Drosophila transposable element canonical sequences
ecologIE
Tools for information extraction from the ecological literature
flyfig
A utility to plot numerical data on a Dipteran body plan
linnaeus
Species name recognition and normalization software.
mcclintock
Meta-pipeline to identify transposable element insertions using next generation sequencing data
ngs_te_mapper
Software for detecting transposable element insertions from next-generation sequencing data
ngs_te_mapper2
Software for detecting transposable element insertions from next-generation sequencing data
TELR
TELR is a fast non-reference transposable element detector from long read sequencing data.
yeast-transposons
Saccharomyces transposable element canonical sequences
bergmanlab's Repositories
bergmanlab/mcclintock
Meta-pipeline to identify transposable element insertions using next generation sequencing data
bergmanlab/TELR
TELR is a fast non-reference transposable element detector from long read sequencing data.
bergmanlab/drosophila-transposons
Drosophila transposable element canonical sequences
bergmanlab/ngs_te_mapper
Software for detecting transposable element insertions from next-generation sequencing data
bergmanlab/ngs_te_mapper2
Software for detecting transposable element insertions from next-generation sequencing data
bergmanlab/ecologIE
Tools for information extraction from the ecological literature
bergmanlab/yeast-transposons
Saccharomyces transposable element canonical sequences
bergmanlab/flyfig
A utility to plot numerical data on a Dipteran body plan
bergmanlab/linnaeus
Species name recognition and normalization software.
bergmanlab/biomart-plus-extras
An extended version of BioMart 0.7 (www.biomart.org).
bergmanlab/contemplate
bergmanlab/enrichmenTE
Software for the analysis of LTR retrotransposon insertions in PCR-enriched NGS samples
bergmanlab/getm
GETM is a tool which is capable of extracting information about the expression of genes from biomedical literature
bergmanlab/MartScript
A scripting language for automatically creating BioMarts.
bergmanlab/samplot
Plot structural variant signals from many BAMs and CRAMs
bergmanlab/bergmanlab.github.io
bergmanlab/biocontext
BioContext is a text mining system for extracting information about molecular processes in biomedical articles.
bergmanlab/blogscripts
Scripts used in Bergman Lab blog posts
bergmanlab/STELR
STELR is Snakemake-enabled bioinformatics system for detecting transposable elements in long read sequencing data.
bergmanlab/TIDAL