bibilujan

Pinned Repositories

utils
Language:R0 1 00
arriba
Fusion caller which runs off of STAR bam
Language:WDL2 3 00
bamQC
Workflow to run bam-qc-metrics (https://github.com/oicr-gsi/bam-qc-metrics)
Language:WDL1 10 12
bwaMem
Workflow for BWA mem
Language:WDL1 14 01
cfMedipsQc
cfMedipsQC workflow produces a set of metrics files for sequencing data generated in methylation profiling of circulating Free DNA.
Language:WDL3 3 00
crosscheckFingerprintsCollector
workflow to generate per library fingerprints for use in gatk CrosscheckFingerprints
Language:WDL1 3 00
delly
Delly workflow produces a set of vcf files with different types of structural variant calls
Language:WDL1 10 02
emSeqQc
Runs bwa-meth followed by bamqc and methyldackel
Language:WDL1 2 00
estimate
ESTIMATE provides researchers with scores for tumor purity, the level of stromal cells present, and the infiltration level of immune cells in tumor tissues based on expression data
Language:Java1 10 00
mutect2
Workflow to run Mutect2 (GATK4)
Language:WDL2 3 02