bichkd

@PfizerRD Cambridge, MA

Pinned Repositories

cellenium
Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).
Language:Jupyter Notebook0 0 00
clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
Language:Nextflow0 0 00
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
Language:C++10
pfred-gui
Repository for PFRED GUI codes
Language:Java00
pfred-service
Repository for PFRED service codes
Language:Perl11
ruby-oci8
Ruby-oci8 - Oracle interface for ruby
Language:Ruby0 0 00
submitit
Python 3.6+ toolbox for submitting jobs to Slurm
Language:Python0 0 00
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:JavaScript1.2k 36 1.6k598
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Language:C++1.9k 50 517332
pfred-rest-service
PFRED Restful Service Implementation
Language:Ruby0 3 11

bichkd/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
Language:C++10
bichkd/pfred-service
Repository for PFRED service codes
Language:Perl11
bichkd/cellenium
Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).
Language:Jupyter Notebook0 0 00
bichkd/clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
Language:Nextflow0 0 00
bichkd/pfred-gui
Repository for PFRED GUI codes
Language:Java00
bichkd/ruby-oci8
Ruby-oci8 - Oracle interface for ruby
Language:Ruby0 0 00
bichkd/submitit
Python 3.6+ toolbox for submitting jobs to Slurm
Language:Python0 0 00