Error in Mounting a folder as volume within the docker
Closed this issue · 6 comments
Hi @chrisfilo
I was able to build the docker, the CI is failing at this command below. I googled it a bit, and it doesn't seem to be about anything specific or clear. Any ideas?
Thanks.
Failing command: docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/outputs1:/outputs bids/${CIRCLE_PROJECT_REPONAME} /bids_dataset /outputs participant --participant_label 01
Exit code: 127
Output:
INFO[0000] Unable to locate /bids_dataset
Nothing comes to my mind immediately. Does it work locally? Did you try
debugging with ssh access on circle?
On Oct 18, 2016 5:09 AM, "Pradeep Reddy Raamana" notifications@github.com
wrote:
Hi @chrisfilo https://github.com/chrisfilo
I was able to build the docker, the CI is failing at this command below. I
googled it a bit, and it doesn't seem to be about anything specific or
clear. Any ideas?Thanks.
Failing command: docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/outputs1:/outputs bids/${CIRCLE_PROJECT_REPONAME} /bids_dataset /outputs participant --participant_label 01
Exit code: 127
Output:
INFO[0000] Unable to locate /bids_dataset—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub
#11, or mute the thread
https://github.com/notifications/unsubscribe-auth/AAOkpxkxC28wVU1BSz3r-3DHqkkm15AKks5q1La9gaJpZM4KZtcw
.
It does work locally on my mac, and also on a CentOs workstation.
I did try debugging via SSH - the few times I tried it was more trouble than worth: cache not loading properly, triggering a rebuild of docker etc. Moreover, I am not sure the mounting problem within a docker image can be debugged via ssh.
I figured it.
what was it?
On Tue, Oct 18, 2016 at 7:29 PM, Pradeep Reddy Raamana <
notifications@github.com> wrote:
—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub
#11 (comment), or mute
the thread
https://github.com/notifications/unsubscribe-auth/AAOkp__rMbqRUwzU1QwdSx-4fU6B0Oz5ks5q1YCbgaJpZM4KZtcw
.
It was the missing entry point to the python wrapper!
Everything ran fine, and OPPNI successfully processed the test1 dataset for the participant and group levels.
Awesome!
On Tue, Oct 18, 2016 at 8:15 PM, Pradeep Reddy Raamana <
notifications@github.com> wrote:
It was the missing entry point to the python wrapper!
Everything ran fine, and OPPNI successfully processed the test1 dataset
for the participant and group levels.—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub
#11 (comment), or mute
the thread
https://github.com/notifications/unsubscribe-auth/AAOkp3k18HHjv2TSNBKqWxDctJALbZBVks5q1YtcgaJpZM4KZtcw
.