bids-standard/pybids

Issues

• sqlite3.OperationalError: table associations already exists

  #1079 opened 2 months ago by MRIDude
  1

• parse_file_entities does not return subject if only filename specified

  #1077 opened 2 months ago by me-pic
  2

• Unable to retrieve json sidecar based on entities of nifti (after replacing `extension`)

  #1072 opened 2 months ago by psadil
  1

• MacOS Finder `._*` hidden metadata files cause pybids to crash

  #1069 opened 3 months ago by shnizzedy
  1

• Getting layout of one subject.

  #1070 opened 3 months ago by MRIDude
  1

• `BIDSLayoutIndexer`'s `**filters` argument not working as expected

  #1062 opened 5 months ago by alperkent
  6

• UnboundLocalError when using BIDSLayout with specific indexer

  #1050 opened 5 months ago by alperkent
  0

• dwi sbref, dwi entities, and TB1* top-level json missing in pybids config.

  #1058 opened 5 months ago by bpinsard
  3

• sqlalchemy crash

  #1056 opened 5 months ago by bpinsard
  5

• TypeError: Expected maxsize to be an integer or None

  #1048 opened 6 months ago by paul-reiners
  2

• Collect entity-linked files in get_associations

  #1043 opened 8 months ago by tsalo
  0

• Inherited metadata overrides immediate metadata for multi-echo data with same-named single-echo

  #1044 opened 7 months ago by tsalo
  0

• Feature Request: Restore BIDSLayout Ability to Target a Single sub- Directory

  #1040 opened 8 months ago by dsemanek
  3

• Feature request: support datatype 'perf' for `layout.get()`

  #1042 opened 8 months ago by tomfrankkirk
  6

• Please support formulaic 0.6.0

  #1000 opened a year ago by musicinmybrain
  4

• All False boolean metadata fields are changed to True

  #1033 opened 10 months ago by tsalo
  12

• Fieldmaps do not find metadata when `part-{mag,phase}` are present and a single sidecar is given

  #1032 opened 10 months ago by oesteban
  7

• Support BIDS-URIs

  #950 opened 2 years ago by effigies
  1

• BIDSValidation error message doesn't provide path of erroneous `dataset_description.json`

  #1022 opened a year ago by pierre-nedelec
  0

• Custom configurations are not passed to derivatives indexer

  #1020 opened a year ago by pierre-nedelec
  9

• BIDSValidationError When Using build_path with tracer

  #1017 opened a year ago by mcsitter
  3

• BUG: null metadata results in indexing failure

  #1015 opened a year ago by effigies
  5

• Python3.12: Test fails with ValueError

  #1012 opened a year ago by penguinpee
  2

• BIDSLayoutIndexer not passed to derivative layouts

  #970 opened a year ago by adelavega
  2

• RFC: PyBIDS 1.0 layout API

  #989 opened a year ago by effigies
  8

• `layout.get` not returning subject directory paths for datasets with no session layer

  #978 opened a year ago by alyssadai
  3

• Bug/Ambiguous parsing when extension but no suffix present

  #991 opened a year ago by pvandyken
  3

• Generally can't use `Query.None` in a list of filters, except for with `run`

  #993 opened a year ago by pvandyken
  2

• Unable to use `Query.*` on extension

  #992 opened a year ago by pvandyken
  2

• ohbm hackathon idea: pybids (+analysis) in the browser

  #982 opened a year ago by adelavega
  3

• modeling: CLI pre-run report

  #910 opened a year ago by adelavega
  1

• Use trailing undescore to disambiguate entity names from python keywords

  #947 opened 2 years ago by pvandyken
  4

• confusion reg. config of extension initial dot

  #966 opened 2 years ago by raamana
  5

• Allow filtering through subject ID when creating layout

  #937 opened 2 years ago by htwangtw
  5

• Tutorial not available

  #938 opened 2 years ago by matteogithub
  5

• PyBIDs query

  #927 opened 2 years ago by yasseraleman
  2

• Problem with Google Collab: ModuleNotFoundError

  #930 opened 2 years ago by mjmoron
  2

• Poor performance of get_subjects() even when using indexing without metadata

  #940 opened 2 years ago by wasciutto
  10

• Indexer - pattern matching is very brittle and does not allow sophisticated configs

  #935 opened 2 years ago by oesteban
  0

• Add conda recipe

  #923 opened 2 years ago by sarthakpati
  3

• Allow custom BIDS configuration JSON when using derivative datasets

  #924 opened 2 years ago by thewilliamdrew
  3

• Handle empty directories more gracefully

  #925 opened 2 years ago by effigies
  0

• pip configparser error on osx

  #921 opened 2 years ago by adelavega
  5

• Provide releases with reproducible downloads

  #919 opened 2 years ago by zougloub
  2

• Update for formulaic 0.5.x?

  #915 opened 2 years ago by sanjayankur31
  1

• StatModels: add provenance / record mode to Transformations

  #900 opened 2 years ago by adelavega
  0

• Allow de-meaning with respect to mean of a group

  #909 opened 2 years ago by effigies
  0

• Grouping by Dataset level variables not possible

  #893 opened 2 years ago by adelavega
  0

• bids.BIDSLayout.build_path() discards dir- label for dwi images

  #895 opened 2 years ago by ajschadler12
  0

• sync_kwargs

  #889 opened 2 years ago by jdkent
  0