Bio-Ontology Research Group

Bio-Ontology Research Group at KAUST

Thuwal, Saudi Arabia

Pinned Repositories

deepgo
Function prediction using a deep ontology-aware classifier
Language:Python80 12 2824
deepgo2
Language:Python34 11 94
deepgoplus
DeepGO with GOPlus axioms
Language:Python90 16 3641
machine-learning-with-ontologies
Language:Jupyter Notebook127 21 231
mowl
mOWL: Machine Learning library with Ontologies
Language:Python62 17 324
multi-drug-embedding
Method for drug repurposing from knowledge graphs and literature
Language:Python33 21 412
ontology-tutorial
Ontology Tutorial
Language:Jupyter Notebook68 18 217
opa2vec
Turning Ontologies Plus Annotation Properties into Vectors
Language:Groovy35 19 1511
phenomenet-vp
A phenotype-based tool for variant prioritization in WES and WGS data
Language:Java37 8 1213
walking-rdf-and-owl
Feature learning over RDF data and OWL ontologies
Language:Python44 15 57

Bio-Ontology Research Group's Repositories

bio-ontology-research-group/deepgoplus
DeepGO with GOPlus axioms
Language:Python90 16 3641
bio-ontology-research-group/mowl
mOWL: Machine Learning library with Ontologies
Language:Python62 17 324
bio-ontology-research-group/deepgo2
Language:Python34 11 94
bio-ontology-research-group/pathophenodb
Web application and additional content for PathoPhenoDB
Language:Python8 12 110
bio-ontology-research-group/deepgometa
Language:Python6 7 00
bio-ontology-research-group/predCAN
Ontology-based prediction of cancer driver genes
Language:Python5 11 04
bio-ontology-research-group/STARVar
STARVar:Symptom based Tool for Automatic Ranking of Variants using evidence from literature and genomes
Language:Python5 12 01
bio-ontology-research-group/EmbedPVP
EmbedPVP: Embedding-based Phenotype Variant Predictor
Language:Python3 6 1
bio-ontology-research-group/KSA001
Telomere-2-Telomere Genome from Saudi Arabia
Language:Common Workflow Language3 11 00
bio-ontology-research-group/PU-GO
Predicting protein functions using positive-unlabeled ranking with ontology-based priors
Language:Python3 11 22
bio-ontology-research-group/Genomic_context
Protein function prediction (GO classes) using genomic context
Language:Python2 6 0
bio-ontology-research-group/16SProcessing
A Nextflow workflow to run vsearch for short read 16S data
Language:Nextflow1 6 10
bio-ontology-research-group/catE
Lattice-preserving ALC ontology embeddings
Language:Python1 2 02
bio-ontology-research-group/Causal-relations-between-diseases
1 2 0
bio-ontology-research-group/deepgoweb
Language:JavaScript1 10 01
bio-ontology-research-group/FunEq
Language:Lean1 1 0
bio-ontology-research-group/jcel
Reasoner for the description logic EL+.
Language:Java1 11 0
bio-ontology-research-group/pangenome
Pangenome workflow in CWL
Language:Common Workflow Language1 11 01
bio-ontology-research-group/DELE
Language:Python
bio-ontology-research-group/FEAS
Language:Python1 0
bio-ontology-research-group/foldcomp
Compressing protein structures effectively with torsion angles
bio-ontology-research-group/gda_analysis
Language:Python1 01
bio-ontology-research-group/geometric_embeddings
Language:Python6 0
bio-ontology-research-group/hguploader
Language:Common Workflow Language13 0
bio-ontology-research-group/LLM_GenePrioritization
Language:Python
bio-ontology-research-group/Metagenomic-DeepFRI
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
Language:Python1 0
bio-ontology-research-group/mrsa-sequences
Arvados sequence uploader and analyzer for MRSA project
Language:Python14 21
bio-ontology-research-group/reasoning-augmented-generation
Reasoning Augmented Generation - BH 2024
Language:Python
bio-ontology-research-group/semrec2023
Language:Python11 0
bio-ontology-research-group/t2t
Language:Python7 01