bio-ontology-research-group/deepgoplus

Issues

• Can't install DeepGOPlus dependencies

  #63 opened 4 months ago by queirozhanna
  3

• DeepGOPlus output

  #65 opened 2 months ago by queirozhanna
  1

• update.py fails to update the deepgoplus database

  #64 opened 3 months ago by remkv6
  0

• Maybe 'pip install deepgoplus' needs a dependency update

  #55 opened 8 months ago by z4668640
  3

• DeepGOPlus code vs DeepGOWeb server inconsistencies

  #40 opened 8 months ago by InesGP
  5

• Is there a download link for the dataset used in Table 3

  #58 opened a year ago by song2000012138
  17

• Evaluate the predictions.pkl provided on CAFA3 with CAFA_assessment_tool

  #62 opened a year ago by song2000012138
  0

• Evaluate the predictions.pkl provided on CAFA3 with CAFA_assessment_tool

  #47 opened 2 years ago by Worldseer
  14

• diamond - annotations

  #61 opened a year ago by vahidodin
  0

• Train model

  #56 opened a year ago by vahidodin
  3

• question

  #59 opened a year ago by JNU-luyi
  0

• How can I evaluate deepgoplus with cafa3 data?

  #57 opened a year ago by song2000012138
  4

• GO results

  #54 opened a year ago by wjq1981
  2

• How to read (data deepgo/'+ont+'. pk) files

  #51 opened 2 years ago by Da-tweekaz
  3

• Some confusion about the web and local versions.

  #52 opened 2 years ago by z4668640
  2

• Obtaining Probabilities Across all GO Terms

  #50 opened 2 years ago by e-trop
  0

• Where the train_data.pkl and test_data.pkl uploaded on 02-Dec-2019 came from?

  #37 opened 3 years ago by nicolasfredesfranco
  11

• predict.py - gzip fails to open ASCII file

  #46 opened 3 years ago by hdetering
  3

• predict.py CLI uses option -tf twice

  #45 opened 3 years ago by hdetering
  0

• go.obo uploaded on 01-Dec-2019

  #38 opened 3 years ago by nicolasfredesfranco
  1

• categorising the result

  #36 opened 4 years ago by dikshyantg
  3

• Running Example, pandas/pickle issues

  #33 opened 4 years ago by CFGrote
  2

• diamond version Error

  #32 opened 4 years ago by coderwzz10
  2

• Try to run 'evaluate_deepgoplus.py' with cafa data

  #9 opened 4 years ago by asangphukieo
  2

• TypeError: list indices must be integers or slices, not str

  #18 opened 4 years ago by Mohamed-ElhajAbdou
  1

• dimond program

  #20 opened 4 years ago by Mohamed-ElhajAbdou
  3

• AttributeError: 'Pandas' object has no attribute 'preds'

  #21 opened 4 years ago by Mohamed-ElhajAbdou
  2

• ValueError: Length of values does not match length of index

  #22 opened 4 years ago by Mohamed-ElhajAbdou
  3

• Error: 'Pandas' object has no attribute 'exp_annotation"

  #26 opened 4 years ago by msing21
  8

• Download link

  #30 opened 4 years ago by coderwzz10
  4

• deamond program Error

  #31 opened 4 years ago by coderwzz10
  0

• Error: no such option: --data-root

  #29 opened 4 years ago by aram10
  8

• Clarification on how the function `calculate_ic` works

  #23 opened 5 years ago by samehkamaleldin
  2

• Issue with evaluation when there are no true go class

  #24 opened 5 years ago by samehkamaleldin
  2

• TypeError: 'DFGenerator' object is not subscriptable #17

  #19 opened 5 years ago by Mohamed-ElhajAbdou
  3

• TypeError: 'DFGenerator' object is not subscriptable

  #17 opened 5 years ago by Mohamed-ElhajAbdou
  2