biocore/q2-qemistree

Issues

• Syntax errors in _fingerprint.py

  #158 opened a year ago by Samiloffe
  1

• Error with command qiime qemistree make-hierarchy

  #157 opened a year ago by anani-a-missinou
  3

• Is qemistree working at the moment?

  #156 opened a year ago by typewritermonkey
  0

• predict-fingerprints takes so much time, it is normal?

  #154 opened 2 years ago by ebervilla
  4

• Do the GNPS website for Qemistree not works now?

  #153 opened 3 years ago by kechen1984
  2

• Plugin error from qemistree: [Errno 2] No such file or directory: '/tmp/qiime2-archive-jo4eaqoo/881ea900-5aef-49db-9408-d5edb694d63d/data/csi-output

  #152 opened 3 years ago by YUANMY2021
  2

• running the demo pipeline

  #151 opened 3 years ago by MuBulut
  2

• install Qemistree error

  #142 opened 4 years ago by jeep3
  1

• Pie chart support

  #132 opened 3 years ago by anupriyatripathi
  0

• Update source to the latest version of Sirius 4.4.29+

  #136 opened 3 years ago by anupriyatripathi
  2

• Updating Qemistree so it runs from SIRIUS workspace and generic input files

  #145 opened 4 years ago by lfnothias
  6

• Wighted vs unweighted UniFrac strong difference

  #149 opened 4 years ago by ArnaudGaudry
  3

• Maximum m/z in compute-fragmentation-trees

  #143 opened 4 years ago by helenamrusso
  1

• iTOL API requires key

  #138 opened 4 years ago by askerdb
  3

• Remove the plot action in favor of q2-empress

  #139 opened 4 years ago by ElDeveloper
  0

• installing with conda

  #141 opened 4 years ago by YiJessePi
  1

• Tree generation on molecular formulas alone

  #137 opened 4 years ago by mortonjt
  0

• Compress files in test-data

  #69 opened 5 years ago by ElDeveloper
  0

• add feature id to tree tips

  #123 opened 5 years ago by anupriyatripathi
  0

• Make structure pop-ups in iTOL rendering

  #85 opened 5 years ago by anupriyatripathi
  0

• add FEATUREDATA.md

  #124 opened 5 years ago by anupriyatripathi
  0

• tackle cases when quant table has some missing tips compared to sirius export

  #116 opened 5 years ago by anupriyatripathi
  0

• Add QC module

  #129 opened 5 years ago by anupriyatripathi
  3

• make zodiac step optional

  #73 opened 5 years ago by anupriyatripathi
  0

• revise fingerprint defaults based on SIRIUS specifications

  #128 opened 5 years ago by anupriyatripathi
  0

• update classyfire API

  #133 opened 5 years ago by anupriyatripathi
  0

• update README

  #93 opened 5 years ago by anupriyatripathi
  1

• make feature table normalization optional

  #120 opened 5 years ago by anupriyatripathi
  1

• add module to append new feature metadata to FeatureData[Molecules]

  #90 opened 5 years ago by anupriyatripathi
  0

• add RT and m/z in feature data output

  #94 opened 5 years ago by anupriyatripathi
  1

• Remove the usage of np.nan for missing values

  #113 opened 5 years ago by ElDeveloper
  0

• add barplot support to qemistree plot module

  #111 opened 5 years ago by anupriyatripathi
  0

• give an option to label and color by different fields in itol metadata

  #105 opened 5 years ago by anupriyatripathi
  0

• disambiguate header names in feature data

  #110 opened 5 years ago by anupriyatripathi
  0

• disable repeated color warning when color file path is not specified

  #109 opened 5 years ago by anupriyatripathi
  1

• convert _itol_metadata.py script to a qemistree module

  #100 opened 5 years ago by anupriyatripathi
  1

• check both `Smiles` and `Compound_Name` for ms2 match

  #97 opened 5 years ago by anupriyatripathi
  0

• allow prune hierarchy to prune by any other field or a list of feature names

  #106 opened 5 years ago by anupriyatripathi
  0

• Adding a "enhance with Qemistree" to FBMN workflow

  #102 opened 5 years ago by DeepaAcharya
  1

• prune hierarchy based on feature abundance and/or prevalence

  #95 opened 5 years ago by anupriyatripathi
  0

• Map feature abundances per metadata column on tree

  #86 opened 5 years ago by anupriyatripathi
  1

• update feature data to include more information from MS/MS library match

  #89 opened 5 years ago by anupriyatripathi
  0

• Save out per feature fingerprints as a new plugin operation

  #60 opened 5 years ago by mwang87
  0

• Expose max mz

  #64 opened 5 years ago by mwang87
  0

• output fingerprint based substructures

  #62 opened 5 years ago by anupriyatripathi
  0

• tree visualization

  #61 opened 5 years ago by anupriyatripathi
  0

• add precursor mass matching before aggregating fingerprints

  #66 opened 5 years ago by anupriyatripathi
  0

• data folder is not including when doing pip install

  #78 opened 5 years ago by mwang87
  1

• Update project name

  #67 opened 6 years ago by ElDeveloper
  1

• Expose parallelism

  #63 opened 6 years ago by mwang87
  0