biocore/qadabra

Issues

• Issue using corncob and metagenomeseq

  #63 opened 7 months ago by bdpessem
  7

• Qadabra Snakemake file using unexpected p-values from corncob and metagenomeseq

  #64 opened 6 months ago by 411an13
  1

• AttributeError: unexpected attribute 'names' to HoverTool, similar attributes are name

  #55 opened 7 months ago by sherlyn99
  0

• Bacteroides vulgatus CAG:6 becomes Bacteroides.vulgatus.CAG.6 when loaded as snakemake inputs, causing error in df.loc

  #56 opened 10 months ago by sherlyn99
  1

• Possible syntax error regarding a HoverTool attribute and use of iteritems on a Series

  #59 opened 8 months ago by 411an13
  12

• Confounders not accepted as string

  #51 opened 8 months ago by ahdilmore
  0

• Metadata with all numerical SampleIDs not accepted

  #50 opened 8 months ago by ahdilmore
  0

• Wrong LICENSE referenced in README

  #48 opened 8 months ago by gibsramen
  1

• Error regarding MaAsLin2 log ratios

  #58 opened 8 months ago by 411an13
  1

• Issue adding the tutorial dataset

  #57 opened 8 months ago by 411an13
  2

• n_splits=5 cannot be greater than the number of members in each class.

  #54 opened 10 months ago by sherlyn99
  0

• error when installing scikit-bio

  #52 opened 10 months ago by ahdilmore
  1

• Better color palette for correlations

  #41 opened a year ago by gibsramen
  1

• Use new bash script support for Songbird

  #40 opened a year ago by gibsramen
  0

• maaslin2 error for covariate with > 2 levels

  #37 opened a year ago by yangchen2
  1

• differentials_table.html opens blank HTML

  #35 opened a year ago by yangchen2
  0

• Target and Reference Level Issue

  #31 opened 2 years ago by SAlkh90-temp
  0

• Fix typo in PCA

  #27 opened 2 years ago by gibsramen
  0

• Check and process covariate, target & reference for valid input

  #6 opened 2 years ago by gibsramen
  0

• Rework repeated K-fold CV

  #25 opened 2 years ago by gibsramen
  1

• Add Kendall tau as rank correlation metric

  #28 opened 2 years ago by gibsramen
  0

• Update Songbird output

  #22 opened 2 years ago by gibsramen
  0

• Reading biom files in R causes an X to be added to column names that start with #

  #24 opened 2 years ago by nearinj
  1

• Add optional phylogenetic tree input + EMPress

  #3 opened 2 years ago by gibsramen
  0

• Add PR curve in addition to ROC

  #8 opened 2 years ago by gibsramen
  0

• Add better logging

  #11 opened 2 years ago by gibsramen
  1

• Use consistent colors for tools in visualizations

  #12 opened 2 years ago by gibsramen
  0

• Update get_pctile_feats rule to only use specific tool output

  #14 opened 2 years ago by gibsramen
  0

• Move PCA from interactive app to own rules

  #4 opened 2 years ago by gibsramen
  0

• Use stacked barplot for UpSet to combine numerator and denominator features

  #1 opened 2 years ago by gibsramen
  0