Pinned Repositories
cadmus
A full-text article retrieval pipeline for biomedical literature.
clusterCons
Merged consensus clustering to assess and improve class discovery with microarray data
MOGDx
MOGDx-PPMI
oa_pmc_extr
This repository automatically requests and extracts Full Text from Open Access PMC.
ParallelPyMetaMap
This code is to run MetaMap in parallel using Python.
Sargasso
Sargasso disambiguates mixed-species high-throughput sequencing data.
sfariexpression
Code repository for SFARI Genes and where to find them; classification modelling to identify genes associated with Autism Spectrum Disorder from RNA-seq data
targetPredictor
project1
topOnto
topOnto - An R package for generically enabled ontology enrichment analysis
Biomedical Informatics Group's Repositories
biomedicalinformaticsgroup/cadmus
A full-text article retrieval pipeline for biomedical literature.
biomedicalinformaticsgroup/ParallelPyMetaMap
This code is to run MetaMap in parallel using Python.
biomedicalinformaticsgroup/Sargasso
Sargasso disambiguates mixed-species high-throughput sequencing data.
biomedicalinformaticsgroup/topOnto
topOnto - An R package for generically enabled ontology enrichment analysis
biomedicalinformaticsgroup/bionlp_resources
Repository where we can keep scripts related to other projects
biomedicalinformaticsgroup/clusterCons
Merged consensus clustering to assess and improve class discovery with microarray data
biomedicalinformaticsgroup/MOGDx-PPMI
biomedicalinformaticsgroup/oa_pmc_extr
This repository automatically requests and extracts Full Text from Open Access PMC.
biomedicalinformaticsgroup/pm_abs_extr
This repository automatically requests and extracts abstract from PubMed.
biomedicalinformaticsgroup/targetPredictor
project1
biomedicalinformaticsgroup/biomedicalinformaticsgroup.github.io
Biomedical Informatics Group @Informatics, Edinburgh University
biomedicalinformaticsgroup/ddp2neo4j
developmental disorders phenotype
biomedicalinformaticsgroup/gene2phenotype
General repository for gene2phenotype oriented code
biomedicalinformaticsgroup/meetings
collections of links, notes and materials associated with our joint Bioinformatics meetings
biomedicalinformaticsgroup/MOGDx
biomedicalinformaticsgroup/OntoSuite-Miner
An NLP pipeline for annotating ontologies from biomedical corpora
biomedicalinformaticsgroup/PPI_RDF
biomedicalinformaticsgroup/sfariexpression
Code repository for SFARI Genes and where to find them; classification modelling to identify genes associated with Autism Spectrum Disorder from RNA-seq data
biomedicalinformaticsgroup/statbio.github.io
biomedicalinformaticsgroup/miRNAtap
biomedicalinformaticsgroup/miRNAtap.db
biomedicalinformaticsgroup/piquant
A pipeline to assess the quantification of transcripts
biomedicalinformaticsgroup/rb_vs_ode_model_of_darpp-32
Repository storing molecular rule-based models in Kappa language and Python-based figures published as the BioRxiv preprint: https://www.biorxiv.org/content/10.1101/2022.03.26.485918v1
biomedicalinformaticsgroup/targetPredictorUpdater
biomedicalinformaticsgroup/topOnto.HDO.db
ontology package for human disease ontology