biosyy

CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

DAISM-XMBD

Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks

Developmental_heart

methy_array

cNMF

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

Consensus_Clustering

An implementation of Consensus clustering in Python

harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

MAGIC

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

nichenetr

NicheNet: predict active ligand-target links between interacting cells

scanorama

Panoramic stitching of single cell data

biosyy/single-cell-and-spatial-transcriptomic

source code of paper

biosyy/nichenetr

NicheNet: predict active ligand-target links between interacting cells

biosyy/cNMF

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

biosyy/harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

biosyy/scanorama

Panoramic stitching of single cell data

biosyy/CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

biosyy/DAISM-XMBD

Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks

biosyy/Consensus_Clustering

An implementation of Consensus clustering in Python

biosyy/MAGIC

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

biosyy/methy_array

biosyy/Developmental_heart