biosyy

biosyy's Stars

• nf-core/rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow878150644699

• broadinstitute/infercnv

  Inferring CNV from Single-Cell RNA-Seq

  Language:R55741581166

• KrishnaswamyLab/MAGIC

  MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

  Language:Jupyter Notebook3372214397

• ventolab/CellphoneDB

  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

  Language:Jupyter Notebook3221019151

• slowkow/harmonypy

  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

  Language:Python19462622

• ZigaSajovic/Consensus_Clustering

  An implementation of Consensus clustering in Python

  Language:Python584716

• yanailab/PanCancer

  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com/:f:/g/personal/dalia_barkley_nyulangone_org/EuHetdAOc2pLjm9XUwqdWicBnlXIbyvHx-EOC-inP-SGUg?e=rxa7Ry

  Language:R24064

• biosyy/CellphoneDB

  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

  Language:Python1000

• biosyy/DAISM-XMBD

  Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks

  Language:Python1000

• biosyy/Developmental_heart

  1000

• biosyy/methy_array

  Language:R1000