biothings/biothings.api

Issues

• jmespath: new 500 error scenario?

  #368 opened 15 days ago by colleenXu
  5

• jmespath: removing higher-level objects based on lower-level matches

  #325 opened 9 months ago by colleenXu
  1

• jmespath: 500 error

  #324 opened 9 months ago by colleenXu
  2

• Problem with jmespath: unexpected behavior with single items (not arrays)

  #323 opened a month ago by colleenXu
  6

• can remove `list_filter` support

  #369 opened 13 days ago by colleenXu
  0

• Broken query endpoint for CLI's dev server

  #364 opened 23 days ago by newgene
  0

• Need a more clear error message for manifest.json issues

  #365 opened a month ago by newgene
  0

• undefined `table_space` for `biothings.cli.utils.get_uploaders` in some cases

  #360 opened a month ago by newgene
  0

• Add option to suppress INFO logs in elastic_transport.transport while retaining WARNING and ERROR logs

  #363 opened 2 months ago by everaldorodrigo
  0

• uploader.switch_collection error in `biothings-cli dataplugin upload`

  #357 opened 2 months ago by newgene
  4

• Add an explicit exception/warning when the uploader produces empty output

  #358 opened 2 months ago by newgene
  0

• Extend MergerStorage Class to Support Both MongoDB and SQLite

  #328 opened 5 months ago by DylanWelzel
  0

• Evaluate and upgrade Elasticsearch v8.x client

  #262 opened 6 months ago by newgene
  0

• Upgrade tornado to patch security issues

  #298 opened 6 months ago by everaldorodrigo
  1

• Support CURIE IDs in annotation endpoint (both GET and POST)

  #306 opened 6 months ago by newgene
  1

• Allow adding in custom volume or any other docker runtime parameters in DockerContainerDumper.

  #293 opened 8 months ago by jal347
  1

• Add a "Data Plugins" tutorial chapter in in BioThings docs

  #313 opened 8 months ago by newgene
  0

• fix `autoscope` feature for annotation endpoint

  #305 opened 10 months ago by newgene
  1

• fix utils.diff.diff_collections helper function to run diffs in parallel

  #315 opened a year ago by newgene
  0

• Undefined `IndexMissingException`

  #294 opened a year ago by erikyao
  0

• add an optional final report to dict_sweep helper function

  #303 opened a year ago by newgene
  0

• support filter query parameter

  #296 opened a year ago by newgene
  3

• Resolve warnings when running tests

  #256 opened 2 years ago by newgene
  1

• add optional name and biothing_type to manifest data plugin

  #254 opened 2 years ago by newgene
  1

• manifest only data plugin support (with predefined parser)

  #259 opened 2 years ago by newgene
  1

• retire the use of pyinotify for autoreloader

  #260 opened 2 years ago by newgene
  1

• Auto_Archive feature in hub

  #261 opened 2 years ago by newgene
  1

• output of hub command document should be sorted alphabetically

  #264 opened 2 years ago by newgene
  1

• create biothings.hub API document

  #265 opened 2 years ago by newgene
  1

• DockerContainerDumper class

  #266 opened 2 years ago by newgene
  1

• Fix Aggregation Web formatter

  #267 opened 2 years ago by jal347
  1

• Autobuild is not correctly triggered when last build is a failed one

  #271 opened 2 years ago by newgene
  1

• biothing_type value should be a single value when it's a single-value list

  #272 opened 2 years ago by newgene
  2

• Verify existing snapshot repository with the SNAPSHOT_CONFIG

  #275 opened 2 years ago by newgene
  1

• Allow manually mark a data source downloaded at the dump step

  #277 opened 2 years ago by newgene
  1

• change extras method of MetadataSourceHandler to be async

  #278 opened 2 years ago by newgene
  3

• `CursorNotFound` Error in `doc_feeder`

  #282 opened 2 years ago by erikyao
  3

• Allow to add version metadata check rules before triggering a release

  #284 opened 2 years ago by newgene
  1

• `get_code_for_mod_name` cannot load generic uploaders

  #289 opened 2 years ago by erikyao
  3

• print out the current test url in BiothingsWebTest

  #273 opened 2 years ago by newgene
  0

• Allow changing the ES index

  #280 opened 2 years ago by everaldorodrigo
  0

• `biothings/utils/dataload.py` code cleaning/refactoring

  #281 opened 2 years ago by erikyao
  3

• `boolean_convert` function converts `None` to `False`

  #274 opened 2 years ago by erikyao
  1

• Add S3 snapshot repository retention policy

  #276 opened 2 years ago by newgene
  0

• Switch to use poetry for packaging and dependency management

  #270 opened 2 years ago by newgene
  1

• Create an Elasticsearch reindex helper function

  #269 opened 2 years ago by newgene
  0

• `ColdHotDiffer.diff_cols()` failed to invoke its super method

  #268 opened 2 years ago by erikyao
  1

• quick_index stops on invalid JSON documents (should skip?)

  #252 opened 2 years ago by newgene
  0

• hub error when installing a full release

  #257 opened 2 years ago by newgene
  0

• indexer should check _id length, skip if too long and raise a warning

  #253 opened 2 years ago by newgene
  2