bjornwallner/DockQ

Issues

• Can script calculate the pdb file which only contain alpha-carbon?

  #39 opened 2 months ago by Ming-Qin-tech
  0

• Grouping chains (receptor and ligand) for evaluation

  #33 opened 3 months ago by heol1
  11

• Parser.py has some issues

  #36 opened 3 months ago by jaideepm009
  9

• CIFs don't seem to work properly

  #34 opened 3 months ago by nzrandol
  4

• Pip Install Issue

  #27 opened 3 months ago by EureKaZhu
  2

• DockQ error

  #28 opened 3 months ago by andregiuseppecavalli
  3

• Python/pip version

  #32 opened 3 months ago by Luke-ebbis
  2

• np.dot(ligand_atoms_sample, rot) error.

  #29 opened 4 months ago by luwei0917
  1

• inconsistent results

  #26 opened 4 months ago by luwei0917
  6

• Can two slightly different （length）sequence be allplied to DockQ algorithm?

  #30 opened 4 months ago by Ming-Qin-tech
  4

• DockQ.py incorrectly calculating iRMS

  #16 opened 5 months ago by kaymccoy
  2

• IndexError: list index out of range

  #15 opened 5 months ago by kaymccoy
  4

• Running Readme Example

  #4 opened 5 months ago by YomnaJehad
  2

• AssertionError: Zero number of equivalent atoms in native and model ligand (chain B) 0 0.

  #5 opened 5 months ago by daniel1991zy
  3

• Readme:./DockQ.py <model> <native>

  #6 opened 5 months ago by Kaixiang-Wang
  9

• PermissionError: [WinError 32]

  #9 opened 5 months ago by kristianwant
  2

• Multichain functionality in readme

  #8 opened 5 months ago by chaotify3317
  3

• Chain size limitations?

  #10 opened 5 months ago by gtauriello
  0

• biopython version

  #11 opened 5 months ago by zjq101
  0

• Chain mismatch , KeyError: 'A'

  #12 opened 5 months ago by nonononanana
  3

• How to align chain ID of two complexes before running DockQ?

  #13 opened 5 months ago by nonononanana
  1

• Receptor as the smaller molecule

  #14 opened 5 months ago by brianjimenez
  0

• fnat error

  #23 opened 5 months ago by halg3
  0

• Script fixnumbering.pl does not output model.pdb.fixed

  #17 opened 5 months ago by JasperGeissler
  10

• [cython branch] Value error when using -perm1 -perm2 flags

  #20 opened 6 months ago by samuelfromm
  1

• Bug in aligning model to native (cython branch)

  #21 opened 6 months ago by alirezaomidi
  1

• cannot install emboss and cannot find "which needle"

  #18 opened 9 months ago by rocke2020
  1

• I got KeyError: 'A'

  #19 opened 9 months ago by partrita
  0

• Trying to run Readme example, issues with make command

  #7 opened 3 years ago by chaotify3317
  2