handling of full paths in command line
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AMChalkie commented
Referencing files by their full path results in a file not found error when file exists:
rubra/rubra.py /vlsci/VR0244/shared/git/rubra/examples/example_pipeline.py --config /vlsci/VR0244/shared/git/rubra/examples/example_config.py --style run
Could not find configuration file: /vlsci/VR0244/shared/git/rubra/examples/example_config.py
ls -al /vlsci/VR0244/shared/git/rubra/examples/example_pipeline.py /vlsci/VR0244/shared/git/rubra/examples/example_config.py
-rw-r----- 1 achalk VR0244 452 Feb 19 10:34 /vlsci/VR0244/shared/git/rubra/examples/example_config.py
-rw-r----- 1 achalk VR0244 847 Feb 19 10:34 /vlsci/VR0244/shared/git/rubra/examples/example_pipeline.py