bjstewart1

bjstewart1's Stars

• HarisIqbal88/PlotNeuralNet

  Latex code for making neural networks diagrams

  Language:TeX22.5k2271222.9k

• stardist/stardist

  StarDist - Object Detection with Star-convex Shapes

  Language:Python95328232223

• hrbrmstr/waffle

  :maple_leaf: Make waffle (square pie) charts in R

  Language:R778297194

• broadinstitute/infercnv

  Inferring CNV from Single-Cell RNA-Seq

  Language:R58140586166

• crazyhottommy/bioinformatics-one-liners

  Bioinformatics one liners from Ming Tang

  459190128

• schochastics/graphlayouts

  new layout algorithms for network visualizations in R

  Language:R27597516

• brentp/somalier

  fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

  Language:Nim272913038

• TheShadow29/research-advice-list

  A compilation of research advice.

  2168016

• cortes-ciriano-lab/SComatic

  A tool for detecting somatic variants in single cell data

  Language:Python18136728

• wheaton5/souporcell

  Clustering scRNAseq by genotypes

  Language:Python1731123046

• kharchenkolab/numbat

  Haplotype-aware CNV analysis from single-cell RNA-seq

  Language:R172919123

• davetang/learning_vcf_file

  Learning the Variant Call Format

  Language:Perl13810240

• chriscainx/mnnpy

  An implementation of MNN (Mutual Nearest Neighbors) correct in python.

  Language:Python7264632

• jon-xu/scSplit

  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.

  Language:Python414289

• buenrostrolab/FigR

  Functional Inference of Gene Regulation

  Language:HTML3954610

• BayraktarLab/cell2fate

  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.

  Language:Python36273

• slowkow/snpsea

  :bar_chart: Identify cell types and pathways affected by genetic risk loci.

  Language:C++35359

• bioFAM/slalom

  Language:Jupyter Notebook28111010

• hemberg-lab/sc3s

  Single Cell Consensus Clustering with Speed

  Language:Python19446

• brianhie/trajectorama

  Multi-study integration of cellular trajectories

  Language:Python18473

• sankaranlab/mito-genotyping

  Repo for scripts for Ludwig et al mtDNA genotyping

  Language:R163511

• WWXkenmo/ICAnet

  Independent Component Analysis decipher functional modules for better cell clustering and annotation

  Language:R16151

• bjstewart1/kidney_sc_immune

  Repository for scRNAseq study of human kidneys

  Language:R15332

• dibbelab/gficf

  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization

  Language:C++152920

• DavisLaboratory/vissE

  An R/Bioconductor package to identify higher-order molecular phenotypes

  Language:R13471

• IlyaLab/gssnng

  Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.

  Language:Jupyter Notebook125133

• bjstewart1/hodgkin_lymphoma_analysis

  hodgkin_lymphoma_analysis

  Language:Jupyter Notebook1200

• bjstewart1/leiden

  Implementation of the Leiden algorithm to be used with igraph called by reticulate in R.

  Language:R1400

• shahcompbio/LTM

  Latent tree models for phylogenetic inference of single-cell data

  Language:Python1401