Pinned Repositories
bmpvieira.com
My website
cobig2
AngularJS app that uses many APIs. Used in the new CoBiG² website.
Dockerfiles
My Dockerfiles. Trusted Builds also available in the Docker registry
gulp-reveal
HTML to Reveal.js
heroku-dat-template
A simple Heroku app template for deploying Dat
python101
Python 101 course slides
python101-administrative
Python 101 course administrative stuff
simple-corsproxy
Proxy to access resources that lack the Access-Control-Allow-Origin * header
xml2json-stream
Converts XML to JSON, using Streams and sax. This can be used with above-memory-limits XML files, as long as they're mostly composed of a repetitive tag.
bmpvieira's Repositories
bmpvieira/bmpvieira.com
My website
bmpvieira/.doom.d
bmpvieira/bionode-fasta
Streamable FASTA parser.
bmpvieira/bionode-gff
GFF parser
bmpvieira/bionode-ncbi
Node.js module for working with the NCBI API (aka e-utils).
bmpvieira/biopkgs
Custom Nix packages not yet available on NixOS/nixpkgs
bmpvieira/bmpvieira
Github profile and CV
bmpvieira/dockter
🐳 A Docker image builder for researchers
bmpvieira/dotfiles
bmpvieira/genomicscourse-1
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
bmpvieira/GEODiver
A Web App for analysing GEO (Gene Expression) data
bmpvieira/homebrew-emacsmacport
Emacs mac port formulae for the Homebrew package manager
bmpvieira/lifebit-composer-untitled-workflow-1-010a02
bmpvieira/lifebit-composer-untitled-workflow-1-618658
bmpvieira/lifebit-composer-untitled-workflow-11-8cc143
bmpvieira/lifebit-composer-untitled-workflow-12-478bfe
bmpvieira/lifebit-composer-untitled-workflow-14-bb32ba
bmpvieira/lifebit-composer-untitled-workflow-15-869d63
bmpvieira/lifebit-composer-untitled-workflow-2-4a1980
bmpvieira/lifebit-composer-untitled-workflow-3-a358b5
bmpvieira/nf-cloud-gpu-test
Simple test Nextflow pipeline for testing GPU capabilities with cloud systems such as AWS Batch
bmpvieira/nixpkgs-1
📦 Stencila's Nix packages collection
bmpvieira/NvChad
Blazing fast Neovim framework providing solid defaults and a beautiful UI, enhancing your neovim experience.
bmpvieira/nvchad-custom
bmpvieira/python101-backend
Back-end of the Python 101 course for biologists
bmpvieira/rnaseq-1
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
bmpvieira/rnatoy
A proof of concept RNA-Seq pipeline with Nextflow
bmpvieira/SBC361-programming-in-R
QMUL's programming in R course
bmpvieira/spammer-nf
A stampede of processes at your fingertips
bmpvieira/talks-1
Pixels Camp v4.0 (March 2020) call for talks — submissions