Pinned Repositories
AbData
ABlooper
Tool for modelling the CDRs of antibodies
alphafold
Open source code for AlphaFold.
alphafold2-pytorch
brennanaba.github.io
Personal website
ImmuneBuilder
Predict the structure of immune receptor proteins
PLAbDab
The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures
SPACE2
Tool for rapid clustering of antibody models by the structure of their CDRs.
Paint4Brains
A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.
kasearch
KA-Search: Rapid and exhaustive sequence identity search of known antibodies
brennanaba's Repositories
brennanaba/ImmuneBuilder
Predict the structure of immune receptor proteins
brennanaba/ABlooper
Tool for modelling the CDRs of antibodies
brennanaba/PLAbDab
The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures
brennanaba/AbData
brennanaba/alphafold2-pytorch
brennanaba/alphafold
Open source code for AlphaFold.
brennanaba/brennanaba.github.io
Personal website
brennanaba/egnn-pytorch
Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch
brennanaba/En-transformer
Implementation of E(n)-Transformer, which extends the ideas of Welling's E(n)-Equivariant Graph Neural Network to attention
brennanaba/H3_loops
brennanaba/FLAb
Fitness landscapes for antibodies
brennanaba/module01_software_engineering
Course content for the SABS-R3 module: Software Engineering
brennanaba/openfold
Trainable PyTorch reproduction of AlphaFold 2
brennanaba/OxThesis
LaTeX template for an Oxford University thesis
brennanaba/plotly
brennanaba/quickNAT_pytorch
PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty