brennanaba

brennanaba's Stars

• oxpig/SPACE2

  Tool for rapid clustering of antibody models by the structure of their CDRs.

  Language:Python174

• brennanaba/PLAbDab

  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures

  Language:Jupyter Notebook116

• oxpig/PLAbDab

  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures

  Language:Jupyter Notebook214

• oxpig/kasearch

  KA-Search: Rapid and exhaustive sequence identity search of known antibodies

  Language:Jupyter Notebook195

• oxpig/ImmuneBuilder

  Predict the structure of immune receptor proteins

  Language:Jupyter Notebook10527

• brennanaba/ImmuneBuilder

  Predict the structure of immune receptor proteins

  Language:Jupyter Notebook4034

• oxpig/Paragraph

  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors

  Language:Python317

• TobiasHeOl/kasearch

  KA-Search: Rapid and exhaustive sequence identity search of known antibodies

  Language:Jupyter Notebook109

• brennanaba/ABlooper

  Tool for modelling the CDRs of antibodies

  Language:Python3216

• Graylab/IgFold

  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

  Language:Python31059

• SABS-R3-AUTOMATED-DATABASE/auto-db-pipeline

  Automated antibody database.

  Language:Python33

• oxpig/AbLang

  AbLang: A language model for antibodies

  Language:Python11423

• deepmodeling/Uni-Fold

  Language:Python9018

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.6k486

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.2k2.2k

• mfinzi/equivariant-MLP

  A library for programmatically generating equivariant layers through constraint solving

  Language:Jupyter Notebook25121

• lucidrains/En-transformer

  Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network

  Language:Python20728

• SABS-R3-projects/Paint4Brains

  A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

  Language:Python10