Issues
- 7
analysis for multiple runs per sample
#410 opened by shishuo16 - 0
- 4
- 5
- 1
Genes and strands must be of the same length
#340 opened by HYJ-hh - 3
Error during AssignCellsToSamples
#369 opened by Thapeachydude - 14
ConvertToReflFlat skips many transcripts
#333 opened by auesro - 8
Dropulation doublet rate very high
#339 opened by terencewtli - 1
CreateIntervalFiles
#358 opened by v-mahughes - 4
Requested array size exceeds VM limit
#350 opened by drneavin - 0
Donor assignment validate inputs CELL_CONTAMINATION_ESTIMATE_FILE and ALLELE_FREQUENCY_ESTIMATE_FILE
#354 opened by jamesnemesh - 1
About generic reads of barcode
#309 opened by 10KGenomics - 5
Adaptor/PolyA Trimmer
#318 opened by v-mahughes - 5
- 2
Dropulation java heap size -m option error
#347 opened by drneavin - 4
Patch to depend on newer biojava4
#273 opened by pgrt - 3
GenotypeSperm
#264 opened by YULEITSINGTAO - 1
- 4
Exception in thread "main" org.broadinstitute.dropseqrna.TranscriptomeException: Base [13] was requested, but the read isn't long enough [GGAC]
#310 opened by CherryX727 - 0
- 2
ConvertToRefFlat Problem
#313 opened by v-mahughes - 1
ParseBarcodeFile support gzipped files
#323 opened by jamesnemesh - 2
The output of DigitalExpress is an empty matrix
#337 opened by HUPINLI - 0
Naming suggestion for outputs of DetectDoublets
#332 opened by ruochiz - 9
Dropulation high doublet call rate
#321 opened by drneavin - 2
AssignCellsToSamples Empty Output
#320 opened by drneavin - 3
Tag Bam
#319 opened by v-mahughes - 6
CreateIntervalFiles
#316 opened by v-mahughes - 0
GatherGeneGCLength breaks on transcript writing
#305 opened by jamesnemesh - 2
about the detectbeadsubstitutionerrors module!
#304 opened by 10KGenomics - 0
GenerateSyntheticDoublets needs unit tests
#290 opened by jamesnemesh - 1
Two problems and their solutions
#270 opened by dconrad - 2
DigitalExpression: Running digital expression without somehow selecting a set of barcodes to process no longer supported
#269 opened by yz3n18 - 2
VDJ Analysis
#254 opened by lzy42 - 2
unknown error using ConvertTagToReadGroup
#243 opened by cynthialiu - 3
- 4
- 1
CreateIntervalsFiles - STAR needs more RAM
#218 opened by yechoi942 - 1
Knee-finding method used in Cell paper
#211 opened by liameabbott - 4
Cell Barcode and UMI on both read 1 and read2
#221 opened by xmeng - 1
- 2
Error in PolyATrimmer
#244 opened by AweiIvy - 0
DigitalExpression 'No space left on device'
#237 opened by LiuYin3 - 0
- 8
- 2
- 4
polyAtrimming NullPointerException
#217 opened by Justgitacc - 0
DigitalExpression very low read counts
#216 opened by Justice-Lu - 2
- 4
MergeBamAlignment -- Do not use this function to merge dictionaries with different sequences in them
#212 opened by Justice-Lu