broadinstitute/dig-diabetes-portal

Issues

• Improve handling of common variants table in federated setting (have "strict" option)

  #139 opened 4 years ago by preetisi
  0

• Fix MOTIF_NAME functionality

  #138 opened 4 years ago by preetisi
  0

• Make sure our current mdvs and data are correct (e.g. federated mdv should not be required to be same as T2D mdv)

  #134 opened 4 years ago by preetisi
  0

• Make all connections in stack to be dynamic -- change mdv / KBs / DBs / cache through the portal

  #133 opened 4 years ago by preetisi
  0

• Solve SQL injection issue

  #130 opened 4 years ago by preetisi
  0

• Take over Hail server

  #141 opened 4 years ago by preetisi
  0

• [bugfix] Some dataset tooltips do not render to values

  #166 opened 4 years ago by abought
  2

• Point this URL to the site: www.broadcvdi.org

  #146 opened 6 years ago by preetisi
  0

• Add analytics capability to track usage separately from other portals

  #144 opened 6 years ago by preetisi
  0

• Ensure we have a database image(s) with all necessary TOP_VARIANTS tables

  #135 opened 6 years ago by preetisi
  0

• Hard requirements on how we promote data/code in normal times and sprints

  #137 opened 7 years ago by preetisi
  0

• Way to document which portals point to which KBs/DBs and which DBs have which data

  #136 opened 7 years ago by preetisi
  0

• CAD should be under MI not lipids

  #147 opened 7 years ago by preetisi
  0

• Data table on Data page page: column headers are not lined up properly with contents of column

  #145 opened 7 years ago by preetisi
  0

• Clean up list of DBs / KBs / portals and come up with defined protocols for promoting data / pointing portals

  #129 opened 7 years ago by preetisi
  0

• Automate "heating up" DB after refresh from snapshot

  #132 opened 7 years ago by preetisi
  0

• Delete redundant / deprecated tables

  #128 opened 7 years ago by preetisi
  0

• Investigate missing rows in common table (e.g. query top variants for BioMe / T2D)

  #142 opened 7 years ago by preetisi
  0

• Move mdv out of dataset names: mdv should just be a tag of a grouping of datasets, upping it should not affect underlying data tables

  #143 opened 7 years ago by preetisi
  0

• Improve gene page queries of TOP_VARIANTS to make multiple queries and show spinner sooner

  #140 opened 7 years ago by preetisi
  0

• Replace VAR_ID with a INTEGER

  #127 opened 7 years ago by preetisi
  0

• Fix column collation issue

  #131 opened 7 years ago by preetisi
  0

• Speed up generation of TOP_VARIANTS

  #124 opened 7 years ago by preetisi
  0

• Make the portal work effectively on small screen sizes

  #82 opened 10 years ago by benralexander
  0

• Add auto suggest for variant lookup

  #81 opened 10 years ago by benralexander
  0

• Pull gene, phenotype category, and variant category from backend

  #74 opened 10 years ago by benralexander
  0

• Reduce columns / normalize columns in TOP_VARIANTS

  #126 opened 7 years ago by preetisi
  0

• Speed up generation of COMMON

  #125 opened 7 years ago by preetisi
  0

• Define process to run production tests on QA server

  #70 opened 10 years ago by flannick
  1

• Define process for testing production server

  #72 opened 10 years ago by flannick
  1

• Define process to update production server

  #71 opened 10 years ago by flannick
  2

• Why is there insufficient data for 13:75900472

  #78 opened 10 years ago by flannick
  2

• Define process to update QA server

  #68 opened 10 years ago by flannick
  2

• Surface version number and database attachment

  #75 opened 10 years ago by benralexander
  1

• Warn users of impending downtime

  #76 opened 10 years ago by benralexander
  1

• Display the REST server the portal is using, and respond sensibly if the server is down

  #80 opened 10 years ago by benralexander
  1

• specify a variant explicitly with chr_position

  #84 opened 10 years ago by benralexander
  0

• handle bad date/non-existent variants

  #83 opened 10 years ago by benralexander
  0

• Could we maintain a comprehensive variant list, whether or not we have significant data?

  #79 opened 10 years ago by benralexander
  3

• Incorporate QQ plot GE into our table search page

  #77 opened 10 years ago by flannick
  0

• Define dev tests

  #63 opened 10 years ago by flannick
  2

• Define process to automatically run dev tests upon committing code

  #65 opened 10 years ago by flannick
  1

• Set up dev, QA, and production web servers

  #62 opened 10 years ago by flannick
  1

• IllegalArgumentException not sufficient for CLI needs

  #73 opened 10 years ago by flannick
  2

• Define process to update dev server

  #64 opened 10 years ago by flannick
  2

• Define QA tests

  #66 opened 10 years ago by flannick
  0

• Define production tests

  #69 opened 10 years ago by flannick
  0

• Define process to run QA tests on dev server

  #67 opened 10 years ago by flannick
  0

• Enable SSL on login

  #60 opened 10 years ago by flannick
  0

• Create google group, have "Send feedback" links go to that

  #61 opened 10 years ago by flannick
  0