bryan-lunt
Currently working in the @UIUCSinhaLab . Future PI and/or wormfood. Professional Yak Shaver.
Department of Computer Science, UC San DiegoUrbana, Illinois
Pinned Repositories
blue-waters-pytorch
Building pytorch on blue waters.
dca_pipeline_services
Docker containers and other things to implement a simple DCA pipeline.
EVFoldReimp
A clean-room reimplementation of Chris Sander / Debora S Marks' EVFold
KSP_GMAT
Tools to allow the use of NASA's GMAT for Kerbal Space Program mission planning. Definitely overkill for a videogame, but that's what I enjoy.
PBSJavaDRMAA
Java bindings for the PBS DRMAA interface.
sdzoo-pathology-contact_tracer
A (relatively general) system for contact tracing of infectious diseases.
SNOT_lang
Simple Numerical Object Transcription (SNOT) is a language similar to JSON meant for numerical computing.
GEMSTAT
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
GEMSTAT_refinement_sampler
A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.
GEMSTAT_scripts
Various task-agnostic scripting language tools for dealing with GEMSTAT.
bryan-lunt's Repositories
bryan-lunt/pdb_tools
PDB Tools Fork
bryan-lunt/Drosophila_Ortholog_Finder
Simple in-house tools for finding orthologous enhancers in Drosophila genomes.
bryan-lunt/ind_variance
Tools for measuring the GEMSTAT variance.
bryan-lunt/keras
Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano and TensorFlow.
bryan-lunt/Meade4504Control
Tools for probing the control protocol of the Mead 4504, and eventually for creating a replacement controller.
bryan-lunt/ucsd-thesis
an effort to create the canonical LaTeX style for typesetting UCSD doctoral dissertations
bryan-lunt/sdzoo-pathology-contact_tracer
A (relatively general) system for contact tracing of infectious diseases.
bryan-lunt/beast2
Bayesian Evolutionary Analysis by Sampling Trees
bryan-lunt/BEASTii
Import from http://code.google.com/p/beastii/
bryan-lunt/BryansClusterUtils
A collection of small utilities and fragments that make life easier on PBS based clusters.
bryan-lunt/DCA-Portal
basic portal container for dcatest
bryan-lunt/execnet
Cloned from https://bitbucket.org/hpk42/execnet and converted from hg
bryan-lunt/FlashAirDownloader
Scripts and whatnot for a Raspberry Pi based NAS which has specific features for photo storage.
bryan-lunt/gatein-wcm
GateIn WCM Service
bryan-lunt/GusfieldPhylo
Implementation of Dan Gusfield's perfect phylogeny algorithm.
bryan-lunt/KOS
Fully programmable autopilot mod for KSP. Originally By Nivekk
bryan-lunt/KSPSavefileEditor
KSP Savefile Editor
bryan-lunt/LendingClub
A Python API for LendingClub
bryan-lunt/LX50SolarAutoguider
An autoguider that allows an LX50 mount to be used with solar telescopes.
bryan-lunt/pbs4java
Fork of the pbs4java project. Maybe some improvements?
bryan-lunt/PDB_Backmapper
A tool to create residue-level mappings between PDB format structure files and HMM or other alignments.
bryan-lunt/PWBFuelBalancer
bryan-lunt/Recursive-neural-networks-TensorFlow
bryan-lunt/remote_ikernel
bryan-lunt/rikaichan
Unofficial import of https://addons.mozilla.org/en-US/firefox/addon/rikaichan/
bryan-lunt/rk
The remote jupyter kernel/kernels administration utility
bryan-lunt/soaplab-bioinfogrid-plugin
Fork of Soaplab's Bioinfogrid-plugin for my own projects. See : http://soaplab.sourceforge.net/soaplab2/
bryan-lunt/soaplabPBS
PBS plugin for soaplab2
bryan-lunt/SupercomputerSuperFamilyTree
The Super Family Tree programs from the Saier Lab, fixed and setup to run on PBS based supercomputers.
bryan-lunt/ThermoModel