bryan-lunt

blue-waters-pytorch

Building pytorch on blue waters.

dca_pipeline_services

Docker containers and other things to implement a simple DCA pipeline.

EVFoldReimp

A clean-room reimplementation of Chris Sander / Debora S Marks' EVFold

KSP_GMAT

Tools to allow the use of NASA's GMAT for Kerbal Space Program mission planning. Definitely overkill for a videogame, but that's what I enjoy.

PBSJavaDRMAA

Java bindings for the PBS DRMAA interface.

sdzoo-pathology-contact_tracer

A (relatively general) system for contact tracing of infectious diseases.

SNOT_lang

Simple Numerical Object Transcription (SNOT) is a language similar to JSON meant for numerical computing.

GEMSTAT

Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

GEMSTAT_refinement_sampler

A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

GEMSTAT_scripts

Various task-agnostic scripting language tools for dealing with GEMSTAT.

bryan-lunt/EVFoldReimp

A clean-room reimplementation of Chris Sander / Debora S Marks' EVFold

bryan-lunt/KSP_GMAT

Tools to allow the use of NASA's GMAT for Kerbal Space Program mission planning. Definitely overkill for a videogame, but that's what I enjoy.

bryan-lunt/PBSJavaDRMAA

Java bindings for the PBS DRMAA interface.

bryan-lunt/dca_pipeline_services

Docker containers and other things to implement a simple DCA pipeline.

bryan-lunt/SNOT_lang

Simple Numerical Object Transcription (SNOT) is a language similar to JSON meant for numerical computing.

bryan-lunt/btc_address_checker

Simple script to check if addresses still have balance.

bryan-lunt/keras

Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano and TensorFlow.

bryan-lunt/ScientificCompression

Better lossless compression for scientific data that stores float values in ASCII files.

bryan-lunt/TulsoftTools

Several general Java tools and utility classes

bryan-lunt/bryan-lunt.github.io

My Github.io page.

bryan-lunt/deepcontact

DeepContact Software

bryan-lunt/experiment_output_caching

A simple framework for caching outputs of time-consuming processes. Intended for scientific pipelines.

bryan-lunt/GEMSTAT

Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

bryan-lunt/GEMSTAT_refinement_sampler

A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

bryan-lunt/GEMSTAT_scripts

Various task-agnostic scripting language tools for dealing with GEMSTAT.

bryan-lunt/GS2

bryan-lunt/HIPS_Spearmint

Spearmint Bayesian optimization codebase

bryan-lunt/jupyter-docker-stacks

Opinionated stacks of ready-to-run Jupyter applications in Docker.

bryan-lunt/lost_jars

Jar files that have become unavailable on the internet due to bitrot. I need these. Will turn into a proper maven repo someday.

bryan-lunt/nix

Nix, the purely functional package manager

bryan-lunt/OperonDB

Update of Operon DB

bryan-lunt/py_pointcloud_reader

pandas-based python parser for pointcloud data

bryan-lunt/Recursive-neural-networks-TensorFlow

bryan-lunt/shellvars-py

Read shell script environment variables into Python

bryan-lunt/Soaplab2

Fork of Soaplab2 for my own projects. See : http://soaplab.sourceforge.net/soaplab2/

bryan-lunt/spearmint

Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper: Practical Bayesian Optimization of Machine Learning Algorithms. Jasper Snoek, Hugo Larochelle and Ryan P. Adams. Advances in Neural Information Processing Systems, 2012

bryan-lunt/StarCluster

StarCluster is an open source cluster-computing toolkit for Amazon's Elastic Compute Cloud (EC2).

bryan-lunt/ThermoModel

bryan-lunt/tree_rnn

Theano implementation of Tree RNNs aka Recursive Neural Networks.

bryan-lunt/unsorted-personal-docker

Currently unsorted, dockers for personal use.